Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-0.11□□□□□ -2.43
USP54Q70EL1 AC093850.1-201ENST00000454121 251 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 TPT1P7-201ENST00000458300 517 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 snoU13.19-201ENST00000459148 104 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MTCO2P29-201ENST00000465212 189 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC-0.11□□□□□ -2.43
USP54Q70EL1 RNU7-28P-201ENST00000516759 62 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AP003716.2-201ENST00000528260 108 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MIR3678-201ENST00000578455 94 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MTND3P19-201ENST00000603825 345 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 RNU6-433P-201ENST00000363216 104 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 RNU6-833P-201ENST00000363486 107 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 AL663109.1-201ENST00000411498 844 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC004386.2-201ENST00000441858 148 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC074133.1-201ENST00000515696 183 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 AP001372.4-201ENST00000524889 472 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.12□□□□□ -2.43
USP54Q70EL1 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-0.12□□□□□ -2.43
USP54Q70EL1 AL512506.1-201ENST00000613918 449 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 AC122133.1-201ENST00000613964 233 ntBASIC-0.12□□□□□ -2.43
USP54Q70EL1 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.12□□□□□ -2.43
USP54Q70EL1 RNY4P3-201ENST00000365254 95 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 MIR214-201ENST00000385214 110 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 MIR1185-1-201ENST00000408598 86 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-0.13□□□□□ -2.43
USP54Q70EL1 AC005002.2-201ENST00000438228 269 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 AC010587.1-201ENST00000505809 469 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 AC103996.1-201ENST00000555468 102 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 MIR4300-201ENST00000581016 96 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 AP001836.1-201ENST00000604675 523 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-0.13□□□□□ -2.43
USP54Q70EL1 AL121895.2-201ENST00000619558 447 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 MTND4P4-201ENST00000439033 1366 ntBASIC-0.13□□□□□ -2.43
USP54Q70EL1 MIR101-1-201ENST00000362265 75 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 SNORD114-31-201ENST00000363219 75 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 RNY1P12-201ENST00000364251 105 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC119618.1-201ENST00000434191 222 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 HSFY5P-201ENST00000453726 309 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-0.14□□□□□ -2.43
USP54Q70EL1 uc_338.34-201ENST00000617467 174 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 RNU6-514P-201ENST00000384208 107 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 SNORA67.2-201ENST00000384300 149 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 RNU6-994P-201ENST00000410507 111 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC008134.1-201ENST00000420943 193 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC009237.7-201ENST00000447357 229 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-0.14□□□□□ -2.43
USP54Q70EL1 AC005562.2-201ENST00000618264 111 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-0.14□□□□□ -2.43
USP54Q70EL1 RNA5SP98-201ENST00000363158 137 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 RNU4-1-201ENST00000363925 141 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 SNORA36A-201ENST00000384221 132 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 MIR320B2-201ENST00000408479 138 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-0.15□□□□□ -2.43
USP54Q70EL1 AC007215.1-201ENST00000464893 276 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.15□□□□□ -2.43
USP54Q70EL1 MIR4645-201ENST00000583158 77 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 MIR1295B-201ENST00000636144 60 ntBASIC-0.15□□□□□ -2.43
USP54Q70EL1 MIR18A-201ENST00000362310 71 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 RNU6-1287P-201ENST00000362914 107 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 RNU4-73P-201ENST00000363164 141 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 RNU6-1060P-201ENST00000384664 107 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 RNU6-679P-201ENST00000391003 106 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 MTCO2P21-201ENST00000419780 677 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 ELOCP4-201ENST00000420090 333 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 HMGN2P22-201ENST00000427588 175 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 MED13P1-201ENST00000428342 171 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.16□□□□□ -2.44
USP54Q70EL1 RPS24P1-201ENST00000438550 371 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.16□□□□□ -2.44
USP54Q70EL1 AP000870.1-201ENST00000472927 406 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 SNORA14.1-201ENST00000516113 141 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 RNU6-1178P-201ENST00000516674 107 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 AC022616.6-201ENST00000520479 119 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 MTATP6P15-201ENST00000527233 835 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-0.16□□□□□ -2.44
USP54Q70EL1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.16□□□□□ -2.44
USP54Q70EL1 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.16□□□□□ -2.44
USP54Q70EL1 AC011155.2-201ENST00000623202 216 ntBASIC-0.16□□□□□ -2.44
USP54Q70EL1 AP000568.1-201ENST00000282964 442 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 RNU6-179P-201ENST00000363350 107 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 RNU6-39P-201ENST00000384344 107 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 MIR562-201ENST00000384894 95 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 MTCYBP36-201ENST00000404146 440 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC-0.17□□□□□ -2.44
USP54Q70EL1 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-0.17□□□□□ -2.44
USP54Q70EL1 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.17□□□□□ -2.44
USP54Q70EL1 AC073261.1-201ENST00000429409 121 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 MTCO3P8-201ENST00000453691 755 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 MTCO3P10-201ENST00000455912 772 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 RNU6-685P-201ENST00000517088 95 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.17□□□□□ -2.44
USP54Q70EL1 AC026470.2-201ENST00000561492 181 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms