Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 HMGB1P29-201ENST00000505659 499 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 AC092436.3-201ENST00000511788 257 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 RNA5SP54-201ENST00000516951 92 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 MTND1P5-201ENST00000517906 940 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.7□□□□□ -2.3
ZNF404Q494X3 CPDP1-201ENST00000579660 283 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 AL020996.3-201ENST00000606617 222 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 AC073114.1-201ENST00000612027 490 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 AC106800.4-201ENST00000614905 153 ntBASIC0.7□□□□□ -2.3
ZNF404Q494X3 AC027514.1-201ENST00000588561 1603 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 Y_RNA.1-201ENST00000352915 104 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 RNU4-76P-201ENST00000364509 141 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.69□□□□□ -2.3
ZNF404Q494X3 RNU6-38P-201ENST00000384085 107 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC063976.4-201ENST00000421971 163 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.69□□□□□ -2.3
ZNF404Q494X3 MTCO2P16-201ENST00000436962 677 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.69□□□□□ -2.3
ZNF404Q494X3 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC048334.1-201ENST00000477975 159 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC105758.1-201ENST00000506038 399 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 RNU7-128P-201ENST00000517247 62 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AL137100.2-201ENST00000555786 315 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC004584.2-201ENST00000570407 410 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC022432.1-201ENST00000595739 310 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC087752.4-201ENST00000605911 462 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 GHRLOS.1-201ENST00000610995 70 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC108706.1-201ENST00000611053 297 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 AC073349.3-201ENST00000617616 186 ntBASIC0.69□□□□□ -2.3
ZNF404Q494X3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
ZNF404Q494X3 RNU6-1266P-201ENST00000362794 105 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 Y_RNA.296-201ENST00000364930 108 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 RNU1-36P-201ENST00000365130 165 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 RNU6-245P-201ENST00000384020 107 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 MIR660-201ENST00000385235 97 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 SNORA12.1-201ENST00000390873 148 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 RPS29P1-201ENST00000465274 159 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 RPS3AP17-201ENST00000472594 777 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 BET1P1-201ENST00000482276 359 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 RN7SKP49-201ENST00000516675 260 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 Y_RNA.695-201ENST00000516715 107 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 LRRC34P1-201ENST00000542742 915 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 AC145350.1-201ENST00000567426 208 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.68□□□□□ -2.3
ZNF404Q494X3 MIR4760-201ENST00000585040 80 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 AC092807.2-201ENST00000609367 243 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.68□□□□□ -2.3
ZNF404Q494X3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
ZNF404Q494X3 RNU4-20P-201ENST00000365601 151 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 SNORD12-201ENST00000391002 90 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 RNU6-1054P-201ENST00000411293 104 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC004941.2-201ENST00000427009 228 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC245047.7-201ENST00000440265 293 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 SNORD124-201ENST00000459577 104 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 ACA64.5-201ENST00000516207 127 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 RNU7-99P-201ENST00000516271 62 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 RNA5SP168-201ENST00000516642 112 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 RNU6-1332P-201ENST00000516666 104 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC016957.1-201ENST00000534895 309 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 MIR4778-201ENST00000577635 80 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC100830.2-201ENST00000581636 240 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 MIR4653-201ENST00000585107 83 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 AL162424.1-201ENST00000602325 221 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 U6.73-201ENST00000619194 103 ntBASIC0.67□□□□□ -2.3
ZNF404Q494X3 AC018630.2-201ENST00000534866 2403 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.66□□□□□ -2.3
ZNF404Q494X3 SNORD87-201ENST00000364849 89 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 SNORD114-24-201ENST00000365029 72 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 SNORA75-201ENST00000384158 137 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 EIF4E2P1-201ENST00000393781 255 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 MIR1185-2-201ENST00000408687 86 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.66□□□□□ -2.3
ZNF404Q494X3 AC002429.1-201ENST00000437672 148 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.66□□□□□ -2.3
ZNF404Q494X3 RNU7-94P-201ENST00000459576 63 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 RNU6-1208P-201ENST00000459588 107 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 SNORD79.1-201ENST00000516069 84 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 AL158063.1-201ENST00000615349 536 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 MIR6788-201ENST00000618842 66 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 Z69908.1-201ENST00000622603 247 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 MIR6866-201ENST00000638146 69 ntBASIC0.66□□□□□ -2.3
ZNF404Q494X3 AC008163.1-202ENST00000636004 2889 ntBASIC0.65□□□□□ -2.31
ZNF404Q494X3 AP000568.1-201ENST00000282964 442 ntBASIC0.65□□□□□ -2.31
ZNF404Q494X3 Y_RNA.124-201ENST00000363339 93 ntBASIC0.65□□□□□ -2.31
ZNF404Q494X3 U3.8-201ENST00000363675 217 ntBASIC0.65□□□□□ -2.31
ZNF404Q494X3 SNORD115-8-201ENST00000363856 82 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms