Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 RNA5SP361-201ENST00000362686 118 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 Y_RNA.159-201ENST00000363674 87 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-636P-201ENST00000384598 107 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-903P-201ENST00000391270 109 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC004866.1-201ENST00000411748 78 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC245047.8-201ENST00000456455 284 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 RNU7-21P-201ENST00000459430 62 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 HMGN1P10-201ENST00000474557 553 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC002350.1-201ENST00000490759 375 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 SNORA70.12-201ENST00000516084 153 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 RNU4-54P-201ENST00000516428 129 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AL031281.1-201ENST00000604049 488 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC104465.1-201ENST00000611365 139 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC068792.1-201ENST00000621354 417 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 AC006435.5-201ENST00000624486 112 ntBASIC0.32□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-181P-201ENST00000363225 107 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-137P-201ENST00000363680 108 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-424P-201ENST00000384367 105 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 SNORD70.1-201ENST00000391007 85 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC016717.1-201ENST00000448918 286 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC233266.1-201ENST00000454518 96 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-445P-201ENST00000516949 107 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 MTND4LP26-201ENST00000518144 282 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 MIR4667-201ENST00000578933 66 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC242852.1-201ENST00000612151 96 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC244015.1-201ENST00000622301 99 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC139792.3-201ENST00000623525 224 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 RNU5B-2P-201ENST00000363036 113 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 Y_RNA.504-201ENST00000384481 104 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 SNORD73A-201ENST00000386062 65 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 RNA5SP323-201ENST00000391094 133 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 RNA5SP25-201ENST00000410815 110 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 SNORD27.1-201ENST00000516319 72 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AP000811.1-201ENST00000603803 651 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 U2.17-201ENST00000611454 95 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AL357075.2-201ENST00000614906 189 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AL607023.1-201ENST00000620045 248 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 AC106754.2-201ENST00000623006 233 ntBASIC0.31□□□□□ -2.36
CCDC88AQ3V6T2 Y_RNA.367-201ENST00000365544 101 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-827P-201ENST00000365553 106 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 Y_RNA.399-201ENST00000383955 105 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AF228730.1-201ENST00000397972 663 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 SNORD111-201ENST00000408139 94 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 MIR1265-201ENST00000408444 86 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 MIR320B2-201ENST00000408479 138 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 MIR1185-1-201ENST00000408598 86 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 RNU2-29P-201ENST00000410423 189 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-1186P-201ENST00000410429 97 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-947P-201ENST00000516264 106 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 RNU7-99P-201ENST00000516271 62 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 SNORA59B-202ENST00000578183 701 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 Z99497.2-201ENST00000603634 310 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC245014.2-201ENST00000603689 287 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC246785.4-201ENST00000605374 287 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC100812.1-201ENST00000607622 580 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 AC023934.1-201ENST00000574529 2389 ntBASIC0.3□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-169P-201ENST00000365336 107 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 MIR208B-201ENST00000401172 77 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 MIR1185-2-201ENST00000408687 86 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 RPS3AP3-201ENST00000411933 242 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 snoU13.25-201ENST00000458945 104 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 UBE2V1P12-201ENST00000503954 474 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AC097462.1-201ENST00000514125 324 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 SNORD111.1-201ENST00000516421 86 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 MIR4703-201ENST00000577728 79 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 MIR4802-201ENST00000581881 80 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AL353765.1-201ENST00000605514 183 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-227P-201ENST00000362865 103 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-1327P-201ENST00000365302 105 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-606P-201ENST00000384721 111 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AL392103.1-201ENST00000447000 198 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 SCARNA18-201ENST00000459004 134 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AF186996.7-201ENST00000492781 209 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 SNORA14.1-201ENST00000516113 141 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AL121992.2-201ENST00000606262 256 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 U6.73-201ENST00000619194 103 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AL603839.4-201ENST00000624658 1005 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AC027279.3-201ENST00000625055 122 ntBASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.29□□□□□ -2.36
CCDC88AQ3V6T2 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 MIRLET7C-201ENST00000362160 84 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 RNU5E-5P-201ENST00000365379 116 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AL355796.1-201ENST00000406706 323 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 460.3 ms