Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA4Q00056 MAPK10-362ENST00000641864 4484 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA4Q00056 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
HOXA4Q00056 AL157777.2-201ENST00000258070 137 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 RNU6-47P-201ENST00000383866 107 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 RNU6-211P-201ENST00000384047 107 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 RNU6-187P-201ENST00000384139 106 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 MIR1185-2-201ENST00000408687 86 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 RNA5SP274-201ENST00000410484 108 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 Z92545.1-201ENST00000411782 234 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.44□□□□□ -2.02
HOXA4Q00056 COX6CP14-201ENST00000469580 174 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 AP004217.1-201ENST00000480579 346 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 AC074198.2-201ENST00000508153 258 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 AC023141.11-201ENST00000508864 202 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 RNA5SP380-201ENST00000517190 98 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 AC022559.1-201ENST00000520905 205 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.44□□□□□ -2.02
HOXA4Q00056 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
HOXA4Q00056 AL365361.1-201ENST00000566942 3481 ntBASIC2.44□□□□□ -2.02
HOXA4Q00056 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA4Q00056 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
HOXA4Q00056 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
HOXA4Q00056 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.44□□□□□ -2.02
HOXA4Q00056 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA4Q00056 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXA4Q00056 MAPK10-266ENST00000641066 6555 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 AC110774.1-201ENST00000623567 2018 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXA4Q00056 RNU1-35P-201ENST00000362782 153 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 SNORD14D-201ENST00000384390 87 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 BMS1P22-201ENST00000414726 313 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
HOXA4Q00056 AC024067.1-201ENST00000426199 223 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXA4Q00056 AC244505.4-201ENST00000434905 287 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 AL135790.2-201ENST00000437701 267 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 RPL23AP58-201ENST00000440453 469 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 AL135938.1-201ENST00000443141 297 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 SSXP5-201ENST00000443473 287 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 AC016717.1-201ENST00000448918 286 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 U8.19-201ENST00000459095 133 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 Y_RNA.637-201ENST00000459424 114 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 RNU7-57P-201ENST00000459540 60 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 SRIP1-201ENST00000489235 288 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.43□□□□□ -2.02
HOXA4Q00056 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXA4Q00056 RNU6-255P-201ENST00000516957 105 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
HOXA4Q00056 AL008718.3-201ENST00000610217 321 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
HOXA4Q00056 AC073349.3-201ENST00000617616 186 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 MIR5739-201ENST00000619803 80 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 SNORA50A-202ENST00000629536 136 ntBASIC2.43□□□□□ -2.02
HOXA4Q00056 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXA4Q00056 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXA4Q00056 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HOXA4Q00056 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXA4Q00056 RNU6-801P-201ENST00000364087 105 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 Y_RNA.270-201ENST00000364693 104 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 RNU6-923P-201ENST00000364753 107 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 RNU6-886P-201ENST00000384319 105 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 Y_RNA.555-201ENST00000384673 110 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 MIR300-201ENST00000401138 83 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 FO393413.1-201ENST00000402892 195 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 COX6CP10-201ENST00000416832 224 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 BTF3P11-201ENST00000426582 477 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 HMGN2P18-201ENST00000450680 270 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXA4Q00056 AC091826.1-201ENST00000514065 313 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 RN7SKP132-201ENST00000516001 208 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXA4Q00056 AP002392.1-201ENST00000537692 208 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 AC018630.3-201ENST00000542637 96 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXA4Q00056 EIF4BP1-201ENST00000554881 351 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXA4Q00056 MIR4753-201ENST00000585119 83 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXA4Q00056 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA4Q00056 AC099778.2-201ENST00000610904 211 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.42□□□□□ -2.02
HOXA4Q00056 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXA4Q00056 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXA4Q00056 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HOXA4Q00056 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
HOXA4Q00056 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
HOXA4Q00056 RNU6-1272P-201ENST00000362776 107 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 RNU1-23P-201ENST00000363361 144 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 SNORD31B-201ENST00000364977 69 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 MIR181B1-201ENST00000385240 110 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 RNU6-1248P-201ENST00000391096 64 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 SNORA48.8-201ENST00000391324 134 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 RNU2-32P-201ENST00000411193 191 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 AC009969.1-201ENST00000438726 172 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms