Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SNORD113-7-201ENST00000363762 77 ntBASIC1.25□□□□□ -2.21
MSH6P52701 RNU6-968P-201ENST00000384076 107 ntBASIC1.25□□□□□ -2.21
MSH6P52701 RNU6-908P-201ENST00000410160 94 ntBASIC1.25□□□□□ -2.21
MSH6P52701 RNU2-16P-201ENST00000410712 136 ntBASIC1.25□□□□□ -2.21
MSH6P52701 RPL30P13-201ENST00000418873 348 ntBASIC1.25□□□□□ -2.21
MSH6P52701 SEPT14P3-201ENST00000439401 183 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AL732372.2-207ENST00000445840 183 ntBASIC1.25□□□□□ -2.21
MSH6P52701 SEPT14P2-201ENST00000453405 183 ntBASIC1.25□□□□□ -2.21
MSH6P52701 MTCO3P8-201ENST00000453691 755 ntBASIC1.25□□□□□ -2.21
MSH6P52701 snoU13.9-201ENST00000458927 103 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AF186996.7-201ENST00000492781 209 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.25□□□□□ -2.21
MSH6P52701 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.25□□□□□ -2.21
MSH6P52701 AC011406.1-201ENST00000512440 370 ntBASIC1.25□□□□□ -2.21
MSH6P52701 SEPT14P4-201ENST00000513445 186 ntBASIC1.25□□□□□ -2.21
MSH6P52701 FO082796.1-201ENST00000523795 183 ntBASIC1.25□□□□□ -2.21
MSH6P52701 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.25□□□□□ -2.21
MSH6P52701 AL162413.1-201ENST00000603198 110 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AC069114.2-201ENST00000604699 304 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AC092954.2-201ENST00000609103 430 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AL133215.3-201ENST00000609801 448 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AL353149.1-201ENST00000610667 244 ntBASIC1.25□□□□□ -2.21
MSH6P52701 AL109933.3-201ENST00000619095 188 ntBASIC1.25□□□□□ -2.21
MSH6P52701 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
MSH6P52701 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.25□□□□□ -2.21
MSH6P52701 Y_RNA.85-201ENST00000363014 111 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RNU6-414P-201ENST00000363705 104 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RNU1-96P-201ENST00000364163 162 ntBASIC1.24□□□□□ -2.21
MSH6P52701 SNORA63D-201ENST00000364359 132 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RNU6-975P-201ENST00000384296 105 ntBASIC1.24□□□□□ -2.21
MSH6P52701 MIR521-1-201ENST00000384902 87 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.24□□□□□ -2.21
MSH6P52701 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
MSH6P52701 AC004866.1-201ENST00000411748 78 ntBASIC1.24□□□□□ -2.21
MSH6P52701 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.24□□□□□ -2.21
MSH6P52701 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.24□□□□□ -2.21
MSH6P52701 Z83846.1-201ENST00000446798 265 ntBASIC1.24□□□□□ -2.21
MSH6P52701 snoU13.30-201ENST00000458951 104 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RPL23AP75-201ENST00000491601 451 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RNA5SP437-201ENST00000517249 129 ntBASIC1.24□□□□□ -2.21
MSH6P52701 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
MSH6P52701 HMGB1P33-201ENST00000563485 527 ntBASIC1.24□□□□□ -2.21
MSH6P52701 MIR4753-201ENST00000585119 83 ntBASIC1.24□□□□□ -2.21
MSH6P52701 AC010525.2-201ENST00000590920 195 ntBASIC1.24□□□□□ -2.21
MSH6P52701 DISC2.1-201ENST00000612827 205 ntBASIC1.24□□□□□ -2.21
MSH6P52701 AC126177.8-201ENST00000618339 1015 ntBASIC1.24□□□□□ -2.21
MSH6P52701 AL359697.1-201ENST00000624879 587 ntBASIC1.24□□□□□ -2.21
MSH6P52701 RNU6-271P-201ENST00000363858 105 ntBASIC1.23□□□□□ -2.21
MSH6P52701 RNU6-128P-201ENST00000383976 107 ntBASIC1.23□□□□□ -2.21
MSH6P52701 SNORA70.7-201ENST00000384159 133 ntBASIC1.23□□□□□ -2.21
MSH6P52701 MIR549A-201ENST00000385268 96 ntBASIC1.23□□□□□ -2.21
MSH6P52701 RNU6-780P-201ENST00000391030 104 ntBASIC1.23□□□□□ -2.21
MSH6P52701 MTND1P1-201ENST00000445453 368 ntBASIC1.23□□□□□ -2.21
MSH6P52701 AC009237.7-201ENST00000447357 229 ntBASIC1.23□□□□□ -2.21
MSH6P52701 NFU1P2-201ENST00000448700 469 ntBASIC1.23□□□□□ -2.21
MSH6P52701 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.23□□□□□ -2.21
MSH6P52701 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.23□□□□□ -2.21
MSH6P52701 RNU6-1281P-201ENST00000516223 105 ntBASIC1.23□□□□□ -2.21
MSH6P52701 DEFB108E-201ENST00000524692 240 ntBASIC1.23□□□□□ -2.21
MSH6P52701 MTND1P35-201ENST00000526739 508 ntBASIC1.23□□□□□ -2.21
MSH6P52701 AC024909.2-201ENST00000553035 286 ntBASIC1.23□□□□□ -2.21
MSH6P52701 SNRPGP20-201ENST00000604477 205 ntBASIC1.23□□□□□ -2.21
MSH6P52701 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.23□□□□□ -2.21
MSH6P52701 AC103810.9-201ENST00000606688 112 ntBASIC1.23□□□□□ -2.21
MSH6P52701 AC137590.2-201ENST00000619709 240 ntBASIC1.23□□□□□ -2.21
MSH6P52701 MIR338-201ENST00000636369 67 ntBASIC1.23□□□□□ -2.21
MSH6P52701 Y_RNA.194-201ENST00000363985 102 ntBASIC1.22□□□□□ -2.21
MSH6P52701 Y_RNA.372-201ENST00000365599 102 ntBASIC1.22□□□□□ -2.21
MSH6P52701 Y_RNA.373-201ENST00000365600 103 ntBASIC1.22□□□□□ -2.21
MSH6P52701 SNORD26-201ENST00000384147 75 ntBASIC1.22□□□□□ -2.21
MSH6P52701 SNORA67.2-201ENST00000384300 149 ntBASIC1.22□□□□□ -2.21
MSH6P52701 RNU6-1235P-201ENST00000384559 107 ntBASIC1.22□□□□□ -2.21
MSH6P52701 CST2P1-201ENST00000425770 87 ntBASIC1.22□□□□□ -2.21
MSH6P52701 FTH1P12-201ENST00000432137 551 ntBASIC1.22□□□□□ -2.21
MSH6P52701 AC016717.1-201ENST00000448918 286 ntBASIC1.22□□□□□ -2.21
MSH6P52701 RNU6-498P-201ENST00000459468 107 ntBASIC1.22□□□□□ -2.21
MSH6P52701 RNA5SP395-201ENST00000516567 118 ntBASIC1.22□□□□□ -2.21
MSH6P52701 RNA5SP481-201ENST00000516814 122 ntBASIC1.22□□□□□ -2.21
MSH6P52701 Y_RNA.704-201ENST00000516851 102 ntBASIC1.22□□□□□ -2.21
MSH6P52701 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.22□□□□□ -2.21
MSH6P52701 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.22□□□□□ -2.21
MSH6P52701 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.22□□□□□ -2.21
MSH6P52701 MIR4422-201ENST00000581938 83 ntBASIC1.22□□□□□ -2.21
MSH6P52701 FAM71BP1-201ENST00000604431 523 ntBASIC1.22□□□□□ -2.21
MSH6P52701 MIR3976-201ENST00000606807 139 ntBASIC1.22□□□□□ -2.21
MSH6P52701 MTND4P5-201ENST00000435821 1374 ntBASIC1.22□□□□□ -2.21
MSH6P52701 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.22□□□□□ -2.21
MSH6P52701 SNORD50.1-201ENST00000362987 71 ntBASIC1.21□□□□□ -2.21
MSH6P52701 SNORD1A-201ENST00000364968 72 ntBASIC1.21□□□□□ -2.21
MSH6P52701 RNU6-933P-201ENST00000384424 107 ntBASIC1.21□□□□□ -2.21
MSH6P52701 MIR1267-201ENST00000408723 78 ntBASIC1.21□□□□□ -2.21
MSH6P52701 Y_RNA.615-201ENST00000410769 117 ntBASIC1.21□□□□□ -2.21
MSH6P52701 RNU2-7P-201ENST00000410794 178 ntBASIC1.21□□□□□ -2.21
MSH6P52701 RNU7-187P-201ENST00000458985 68 ntBASIC1.21□□□□□ -2.21
MSH6P52701 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.21□□□□□ -2.21
MSH6P52701 Y_RNA.665-201ENST00000516177 98 ntBASIC1.21□□□□□ -2.21
MSH6P52701 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.21□□□□□ -2.21
MSH6P52701 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.21□□□□□ -2.21
MSH6P52701 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.21□□□□□ -2.21
MSH6P52701 MIR1321-201ENST00000637766 79 ntBASIC1.21□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms