Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL365361.1-201ENST00000566942 3481 ntBASIC2.03□□□□□ -2.09
HOXA1P49639 RNU6-859P-201ENST00000362728 107 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNA5SP387-201ENST00000364226 106 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNA5SP240-201ENST00000365355 128 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 SNORA63.7-201ENST00000365579 123 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNU6-418P-201ENST00000384035 107 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 SNORD14D-201ENST00000384390 87 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 Y_RNA.498-201ENST00000384460 102 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNU6-1026P-201ENST00000384465 108 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNU6-102P-201ENST00000384485 104 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 MIR548B-201ENST00000385247 97 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 Y_RNA.602-201ENST00000410535 92 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 MTCYBP9-201ENST00000431021 303 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXA1P49639 AC005002.2-201ENST00000438228 269 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
HOXA1P49639 AC073910.1-201ENST00000445047 438 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 HMGN2P9-201ENST00000476875 229 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNU6-570P-201ENST00000517051 105 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 RNA5SP490-201ENST00000517141 136 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 MIR4300-201ENST00000581016 96 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 Y_RNA.772-201ENST00000606692 102 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 AC010205.1-201ENST00000616668 449 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 AC130454.1-201ENST00000622948 401 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 AC068205.3-201ENST00000636385 468 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.02□□□□□ -2.09
HOXA1P49639 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.02□□□□□ -2.09
HOXA1P49639 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HOXA1P49639 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.01□□□□□ -2.09
HOXA1P49639 Y_RNA.144-201ENST00000363521 113 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 Y_RNA.286-201ENST00000364813 102 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 Y_RNA.396-201ENST00000383949 103 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 RNU6-611P-201ENST00000384276 104 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.01□□□□□ -2.09
HOXA1P49639 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AL513328.1-201ENST00000446460 224 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.01□□□□□ -2.09
HOXA1P49639 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
HOXA1P49639 AC096725.1-201ENST00000514266 313 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 MTCO2P24-201ENST00000515611 426 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 RNA5SP282-201ENST00000516355 108 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXA1P49639 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXA1P49639 AC079600.2-201ENST00000550076 130 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 MIR4503-201ENST00000582187 83 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AC005000.2-201ENST00000605468 310 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 MIR376A1-201ENST00000616574 68 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AL449363.1-201ENST00000617815 186 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 uc_338.20-201ENST00000621563 178 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AC091932.3-201ENST00000624223 323 ntBASIC2.01□□□□□ -2.09
HOXA1P49639 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2□□□□□ -2.09
HOXA1P49639 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
HOXA1P49639 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
HOXA1P49639 Y_RNA.101-201ENST00000363154 102 ntBASIC2□□□□□ -2.09
HOXA1P49639 Y_RNA.149-201ENST00000363558 117 ntBASIC2□□□□□ -2.09
HOXA1P49639 Y_RNA.152-201ENST00000363578 100 ntBASIC2□□□□□ -2.09
HOXA1P49639 Y_RNA.176-201ENST00000363815 109 ntBASIC2□□□□□ -2.09
HOXA1P49639 Y_RNA.183-201ENST00000363882 113 ntBASIC2□□□□□ -2.09
HOXA1P49639 SNORA38-201ENST00000363946 132 ntBASIC2□□□□□ -2.09
HOXA1P49639 RNU6-505P-201ENST00000384427 107 ntBASIC2□□□□□ -2.09
HOXA1P49639 MIR561-201ENST00000385216 97 ntBASIC2□□□□□ -2.09
HOXA1P49639 MRPL35P1-201ENST00000404272 572 ntBASIC2□□□□□ -2.09
HOXA1P49639 MIR1283-1-201ENST00000408494 87 ntBASIC2□□□□□ -2.09
HOXA1P49639 AL356379.1-201ENST00000414105 126 ntBASIC2□□□□□ -2.09
HOXA1P49639 AC105272.1-201ENST00000438604 198 ntBASIC2□□□□□ -2.09
HOXA1P49639 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2□□□□□ -2.09
HOXA1P49639 AC104435.1-201ENST00000483483 166 ntBASIC2□□□□□ -2.09
HOXA1P49639 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2□□□□□ -2.09
HOXA1P49639 AC093259.1-201ENST00000509755 300 ntBASIC2□□□□□ -2.09
HOXA1P49639 AP003733.2-201ENST00000529409 171 ntBASIC2□□□□□ -2.09
HOXA1P49639 AC233702.2-202ENST00000562547 291 ntBASIC2□□□□□ -2.09
HOXA1P49639 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2□□□□□ -2.09
HOXA1P49639 AC004467.1-201ENST00000615678 330 ntBASIC2□□□□□ -2.09
HOXA1P49639 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HOXA1P49639 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
HOXA1P49639 snoU2_19.2-201ENST00000363024 80 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 SNORD115-3-201ENST00000363100 82 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 SNORD113-8-201ENST00000363497 74 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 RNU6-454P-201ENST00000364292 107 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 SNORD114-30-201ENST00000364448 72 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 Y_RNA.483-201ENST00000384380 101 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 MT-TW-201ENST00000387382 68 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 MIR1262-201ENST00000408276 93 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 AC009238.1-201ENST00000442165 424 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 AC009237.6-201ENST00000446969 424 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 PRELID3BP1-201ENST00000457142 540 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 SRI-210ENST00000490437 570 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXA1P49639 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXA1P49639 CYCSP26-201ENST00000534107 320 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXA1P49639 LARP7P3-201ENST00000579888 337 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 AC005176.2-201ENST00000596933 147 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 PRR13P7-201ENST00000605538 430 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 MIR7106-201ENST00000612419 65 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 AC008873.1-201ENST00000625051 138 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 AL137790.1-201ENST00000634283 177 ntBASIC1.99□□□□□ -2.09
HOXA1P49639 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
HOXA1P49639 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXA1P49639 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.98□□□□□ -2.09
HOXA1P49639 MIR340-201ENST00000362125 95 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms