Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 MIR1283-1-201ENST00000408494 87 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 RNU4-62P-201ENST00000410125 130 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 MTCO3P29-201ENST00000432119 779 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 AC236972.2-201ENST00000434979 310 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 SNRPEP8-201ENST00000442866 260 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.78□□□□□ -2.12
NEDD4P46934 ELOCP24-201ENST00000456370 334 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 AC114982.1-201ENST00000469402 321 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 AC055731.1-201ENST00000474387 401 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 RNU6-1114P-201ENST00000516022 107 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 SNORA25.14-201ENST00000516481 132 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 RNU2-34P-201ENST00000516534 121 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 RRN3P3-201ENST00000549207 578 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.78□□□□□ -2.12
NEDD4P46934 SUB1P3-201ENST00000564581 315 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.78□□□□□ -2.12
NEDD4P46934 AC090617.3-201ENST00000573670 475 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.78□□□□□ -2.12
NEDD4P46934 MIR4753-201ENST00000585119 83 ntBASIC1.78□□□□□ -2.12
NEDD4P46934 RNU6-545P-201ENST00000362681 104 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 SNORD115-3-201ENST00000363100 82 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 Y_RNA.106-201ENST00000363189 100 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 Y_RNA.338-201ENST00000365320 114 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 Y_RNA.577-201ENST00000384794 101 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 MIR586-201ENST00000385035 97 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 MIR549A-201ENST00000385268 96 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 RNY4P36-201ENST00000391116 96 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 USP9YP16-201ENST00000430287 407 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 MTND3P23-201ENST00000431980 347 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 AL353997.1-201ENST00000432936 108 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 UBE2V1P7-201ENST00000446395 340 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 AC074290.1-201ENST00000448883 135 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 USP9YP23-201ENST00000455085 407 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 RPL30P15-201ENST00000457129 321 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 RNA5SP233-201ENST00000459153 113 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 AP000870.1-201ENST00000472927 406 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.77□□□□□ -2.13
NEDD4P46934 MTND3P22-201ENST00000510932 243 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 RNU6-470P-201ENST00000515954 104 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 Y_RNA.718-201ENST00000517110 102 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.77□□□□□ -2.13
NEDD4P46934 Y_RNA.804-201ENST00000615262 101 ntBASIC1.77□□□□□ -2.13
NEDD4P46934 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
NEDD4P46934 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.76□□□□□ -2.13
NEDD4P46934 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.76□□□□□ -2.13
NEDD4P46934 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
NEDD4P46934 Y_RNA.4-201ENST00000362333 112 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 RNU6-873P-201ENST00000363833 107 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.76□□□□□ -2.13
NEDD4P46934 MIR10B-201ENST00000385011 110 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 MIR17-201ENST00000385012 84 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
NEDD4P46934 AC004866.1-201ENST00000411748 78 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.76□□□□□ -2.13
NEDD4P46934 MTCO1P44-201ENST00000441935 243 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AL357134.1-201ENST00000445848 426 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 Y_RNA.632-201ENST00000459189 102 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AC067942.3-201ENST00000512025 362 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 RNU6-948P-201ENST00000516374 107 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 CYCSP23-201ENST00000519781 313 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.76□□□□□ -2.13
NEDD4P46934 AC004584.2-201ENST00000570407 410 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 SNORD53B-201ENST00000577887 78 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AC007229.1-201ENST00000590455 412 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 SNORD11B-201ENST00000607707 90 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AC005296.1-201ENST00000616145 209 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.76□□□□□ -2.13
NEDD4P46934 MTND4LP32-201ENST00000636111 270 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 AC008555.8-201ENST00000623602 2168 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 MTND5P16-201ENST00000460269 1703 ntBASIC1.76□□□□□ -2.13
NEDD4P46934 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.75□□□□□ -2.13
NEDD4P46934 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
NEDD4P46934 Y_RNA.179-201ENST00000363844 90 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 Y_RNA.187-201ENST00000363918 113 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 RNA5SP493-201ENST00000364115 91 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 RNU6-890P-201ENST00000384121 107 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 RNU6-281P-201ENST00000384212 103 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 RNU6-793P-201ENST00000384233 104 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 SNORA67.2-201ENST00000384300 149 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 RNU11-3P-201ENST00000391111 133 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 MIR1304-201ENST00000408243 91 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 MIR1283-2-201ENST00000408621 87 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 Y_RNA.595-201ENST00000410403 105 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 AL354695.1-201ENST00000427935 228 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 MTND2P29-201ENST00000438595 412 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 SNORD19B-201ENST00000459623 84 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 AC022493.2-201ENST00000506122 481 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.75□□□□□ -2.13
NEDD4P46934 MIR2355-201ENST00000517199 87 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 AL096840.1-201ENST00000603287 93 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.75□□□□□ -2.13
NEDD4P46934 AC126177.8-201ENST00000618339 1015 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 AC008873.1-201ENST00000625051 138 ntBASIC1.75□□□□□ -2.13
NEDD4P46934 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
NEDD4P46934 MIR340-201ENST00000362125 95 ntBASIC1.74□□□□□ -2.13
NEDD4P46934 RNU6-490P-201ENST00000362985 107 ntBASIC1.74□□□□□ -2.13
NEDD4P46934 RNU4-73P-201ENST00000363164 141 ntBASIC1.74□□□□□ -2.13
NEDD4P46934 RNU6-23P-201ENST00000363283 107 ntBASIC1.74□□□□□ -2.13
NEDD4P46934 RNU6-1305P-201ENST00000364353 104 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 383.3 ms