Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-180P-201ENST00000516697 61 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC-0.76□□□□□ -2.53
CUX1P39880 AC026616.1-201ENST00000523157 525 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-0.76□□□□□ -2.53
CUX1P39880 MIR4436A-201ENST00000585278 85 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 AC104458.1-201ENST00000608243 463 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 AC131159.1-201ENST00000621854 213 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 MIR4788-201ENST00000639104 80 ntBASIC-0.76□□□□□ -2.53
CUX1P39880 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.77□□□□□ -2.53
CUX1P39880 RNU6-78P-201ENST00000362897 107 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 RNU6-934P-201ENST00000365154 107 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 RNU6-975P-201ENST00000384296 105 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 RNU6-925P-201ENST00000384629 104 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 SNORD100-201ENST00000408573 76 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 AC006366.1-201ENST00000422002 759 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-0.77□□□□□ -2.53
CUX1P39880 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-0.77□□□□□ -2.53
CUX1P39880 AC244670.1-201ENST00000436879 112 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 U8.21-201ENST00000459536 136 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-0.77□□□□□ -2.53
CUX1P39880 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.77□□□□□ -2.53
CUX1P39880 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.77□□□□□ -2.53
CUX1P39880 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.77□□□□□ -2.53
CUX1P39880 ZNF971P-201ENST00000562068 1249 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-0.77□□□□□ -2.53
CUX1P39880 AC007684.1-201ENST00000609671 477 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 AC231657.1-201ENST00000624313 397 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 MIR499B-201ENST00000636498 73 ntBASIC-0.77□□□□□ -2.53
CUX1P39880 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC-0.78□□□□□ -2.53
CUX1P39880 RNU6-1141P-201ENST00000364520 107 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 RPS3AP3-201ENST00000411933 242 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC-0.78□□□□□ -2.53
CUX1P39880 DEFB130D-201ENST00000426866 237 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 RNU7-129P-201ENST00000516128 62 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-0.78□□□□□ -2.53
CUX1P39880 AC090517.1-201ENST00000569307 266 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 AL157770.1-201ENST00000623049 439 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 AC093875.1-201ENST00000623688 504 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 AC092104.1-201ENST00000497346 1441 ntBASIC-0.78□□□□□ -2.53
CUX1P39880 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC005042.3-201ENST00000453230 174 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 RN7SKP164-201ENST00000516138 266 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 MIR4804-201ENST00000581683 73 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 MIR4753-201ENST00000585119 83 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC090186.1-201ENST00000605991 572 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AL355073.2-201ENST00000612106 557 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC010975.3-201ENST00000618727 978 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC068792.1-201ENST00000621354 417 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 MIR4320-201ENST00000636981 65 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC-0.79□□□□□ -2.54
CUX1P39880 SNORA36.1-201ENST00000363424 132 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 HSFY7P-201ENST00000432672 318 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 HSFY8P-201ENST00000437934 318 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC010468.3-201ENST00000508225 458 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC112206.4-201ENST00000515142 405 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 Y_RNA.689-201ENST00000516589 107 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-0.79□□□□□ -2.54
CUX1P39880 AC124016.2-201ENST00000610058 665 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 AC103706.2-201ENST00000638080 240 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 MTND5P33-201ENST00000571250 1450 ntBASIC-0.79□□□□□ -2.54
CUX1P39880 RNU6-744P-201ENST00000365557 107 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 RNU6-1316P-201ENST00000384242 108 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 MTND3P17-201ENST00000416968 344 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-0.8□□□□□ -2.54
CUX1P39880 MTCO1P20-201ENST00000425366 358 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 CALM2P4-201ENST00000430810 426 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 USP9YP28-201ENST00000435142 589 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 AC007327.1-201ENST00000447461 264 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 DEFB108A-201ENST00000530110 222 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-0.8□□□□□ -2.54
CUX1P39880 AC138869.1-201ENST00000568623 124 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 AC098679.4-201ENST00000624241 654 ntBASIC-0.8□□□□□ -2.54
CUX1P39880 SNORD114-11-201ENST00000363738 75 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 RNU6-1122P-201ENST00000384449 107 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 MIR520C-201ENST00000385005 87 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 RNU6-1245P-201ENST00000411130 106 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 AC010975.2-201ENST00000427781 588 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 AC005002.2-201ENST00000438228 269 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 ZNF736P5Y-201ENST00000451173 805 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 SNRPGP7-201ENST00000469016 106 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 AC107401.1-201ENST00000503426 685 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 AC116562.3-201ENST00000506136 177 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC-0.81□□□□□ -2.54
CUX1P39880 AL117336.2-201ENST00000602435 335 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 AC006504.8-201ENST00000621046 635 ntBASIC-0.81□□□□□ -2.54
CUX1P39880 RNU6-384P-201ENST00000364900 104 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 RNA5SP163-201ENST00000410304 99 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 RNU7-99P-201ENST00000516271 62 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 AP001372.4-201ENST00000524889 472 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 AC023050.3-201ENST00000541142 333 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-0.82□□□□□ -2.54
CUX1P39880 VN1R87P-201ENST00000596706 487 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 AC078795.3-201ENST00000602913 472 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 AC005520.5-201ENST00000613926 164 ntBASIC-0.82□□□□□ -2.54
CUX1P39880 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.83□□□□□ -2.54
CUX1P39880 RNU2-42P-201ENST00000410697 113 ntBASIC-0.83□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms