Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR548P-201ENST00000408336 84 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 MIR1302-9-201ENST00000408365 138 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 MIR1302-10-201ENST00000408734 138 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.21□□□□□ -2.06
SHMT1P34896 AL354751.2-201ENST00000415471 210 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 EDDM3CP-201ENST00000415977 425 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.21□□□□□ -2.06
SHMT1P34896 MTND1P14-201ENST00000427400 950 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AL137159.1-201ENST00000452808 512 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.21□□□□□ -2.06
SHMT1P34896 PRELID3BP1-201ENST00000457142 540 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AC093259.1-201ENST00000509755 300 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 ATP5EP1-201ENST00000510257 156 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 CYCSP23-201ENST00000519781 313 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT1P34896 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT1P34896 VN1R91P-201ENST00000594377 169 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 MIR1302-2-201ENST00000607096 138 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AC006157.1-201ENST00000611750 366 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 U2.1-201ENST00000618978 145 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 AC138305.3-201ENST00000624988 240 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 RNU1-17P-201ENST00000363022 152 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 RNY1P14-201ENST00000384426 108 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 MIR628-201ENST00000385229 95 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 AC004866.1-201ENST00000411748 78 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 MTCO3P19-201ENST00000415864 321 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT1P34896 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT1P34896 AC005534.2-201ENST00000431047 433 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT1P34896 AC245102.2-201ENST00000448956 180 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 RNU6-717P-201ENST00000459076 104 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 U8.22-201ENST00000459141 133 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 AC090255.1-201ENST00000495779 349 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT1P34896 RRN3P3-201ENST00000549207 578 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 SNORD11B-201ENST00000607707 90 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 AC022140.2-201ENST00000623500 188 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 AL606534.2-204ENST00000635008 178 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 MIR4272-201ENST00000635924 64 ntBASIC2.2□□□□□ -2.06
SHMT1P34896 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
SHMT1P34896 Y_RNA.28-201ENST00000362554 111 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RNU6-694P-201ENST00000364071 147 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RNY3P11-201ENST00000364153 102 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RNU6-1227P-201ENST00000383981 107 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 MIR329-1-201ENST00000385028 80 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 AL033519.2-201ENST00000403958 392 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 MIR1283-1-201ENST00000408494 87 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 PMCHL1-202ENST00000423102 261 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.19□□□□□ -2.06
SHMT1P34896 SNORA25.10-201ENST00000515926 124 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 Y_RNA.683-201ENST00000516508 93 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RN7SKP49-201ENST00000516675 260 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RNU4-77P-201ENST00000516692 156 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 MIR514B-201ENST00000516774 80 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RN7SKP295-201ENST00000517264 153 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 RNU6-988P-201ENST00000519081 107 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SHMT1P34896 AL442163.3-201ENST00000554110 156 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 AC006600.1-201ENST00000572529 153 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 MIR4753-201ENST00000585119 83 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 AC125232.2-201ENST00000592457 143 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 AC083806.3-201ENST00000614016 455 ntBASIC2.19□□□□□ -2.06
SHMT1P34896 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SHMT1P34896 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
SHMT1P34896 MTND5P35-201ENST00000557537 1720 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 Y_RNA.31-201ENST00000362574 102 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 RNU6-545P-201ENST00000362681 104 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 Y_RNA.132-201ENST00000363421 102 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 Y_RNA.332-201ENST00000365271 113 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 RNU6-1145P-201ENST00000384246 107 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 MIR586-201ENST00000385035 97 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
SHMT1P34896 AL355497.1-201ENST00000406262 551 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 Y_RNA.595-201ENST00000410403 105 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 RNA5SP338-201ENST00000410495 85 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 MCFD2P1-201ENST00000417812 300 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC123900.1-201ENST00000420390 96 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC096644.2-201ENST00000429278 159 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.18□□□□□ -2.06
SHMT1P34896 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.18□□□□□ -2.06
SHMT1P34896 MTND4P19-201ENST00000446659 478 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC074290.1-201ENST00000448883 135 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC007395.1-201ENST00000451333 677 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.18□□□□□ -2.06
SHMT1P34896 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.18□□□□□ -2.06
SHMT1P34896 AC016925.1-201ENST00000458303 298 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC114982.1-201ENST00000469402 321 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC091179.3-201ENST00000474761 144 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 RNU6-475P-201ENST00000516073 104 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 SNORA40.14-201ENST00000516543 86 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 RNA5SP137-201ENST00000516833 135 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 GNAI2P1-201ENST00000541815 315 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.18□□□□□ -2.06
SHMT1P34896 AC012640.5-201ENST00000623897 319 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AC068205.3-201ENST00000636385 468 ntBASIC2.18□□□□□ -2.06
SHMT1P34896 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.18□□□□□ -2.06
SHMT1P34896 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SHMT1P34896 RNU6-1301P-201ENST00000362724 104 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms