Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MTND3P20-201ENST00000407663 186 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 AC098592.1-201ENST00000419352 333 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 AL953862.1-201ENST00000423016 168 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 MTND1P14-201ENST00000427400 950 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC-1.17□□□□□ -2.6
HMGA1P17096 MTND1P36-201ENST00000522384 936 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 AC023442.1-201ENST00000531247 422 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-1.17□□□□□ -2.6
HMGA1P17096 MIR378F-201ENST00000578143 78 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 AC100830.2-201ENST00000581636 240 ntBASIC-1.17□□□□□ -2.6
HMGA1P17096 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-1.17□□□□□ -2.6
HMGA1P17096 MTND5P33-201ENST00000571250 1450 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 RNU6-395P-201ENST00000365662 106 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 RNU6-1186P-201ENST00000410429 97 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 HSFY7P-201ENST00000432672 318 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 HSFY8P-201ENST00000437934 318 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 SUMO1P2-201ENST00000452524 304 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 RNU6-953P-201ENST00000459154 107 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 RPS29P27-201ENST00000463711 170 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 AL133153.1-201ENST00000557756 303 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 NAMPTP3-201ENST00000569273 224 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 AC090517.1-201ENST00000569307 266 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 MIR1273C-201ENST00000578669 77 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 AC104458.1-201ENST00000608243 463 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-1.18□□□□□ -2.6
HMGA1P17096 AC063944.3-201ENST00000609969 533 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 AC008250.2-201ENST00000615261 205 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 AL357080.1-201ENST00000617394 239 ntBASIC-1.18□□□□□ -2.6
HMGA1P17096 RNA5SP48-201ENST00000363969 126 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 RNU6-819P-201ENST00000364116 107 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 RNU4-16P-201ENST00000364737 141 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 MIR873-201ENST00000401120 77 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 MIR300-201ENST00000401138 83 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 AC007969.2-201ENST00000441891 191 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 EXOSC3P1-201ENST00000448649 500 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-1.19□□□□□ -2.6
HMGA1P17096 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-1.19□□□□□ -2.6
HMGA1P17096 Y_RNA.666-201ENST00000516187 112 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 AC090572.1-201ENST00000519251 160 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 MTCO3P15-201ENST00000526563 574 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.19□□□□□ -2.6
HMGA1P17096 AC006380.1-201ENST00000603598 186 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 AC008608.1-201ENST00000603910 127 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 AC090617.9-201ENST00000623751 147 ntBASIC-1.19□□□□□ -2.6
HMGA1P17096 Y_RNA.18-201ENST00000362461 102 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 Y_RNA.168-201ENST00000363740 102 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 Y_RNA.303-201ENST00000364998 94 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 RNU6-934P-201ENST00000365154 107 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 Y_RNA.572-201ENST00000384757 98 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 AL627311.1-201ENST00000431514 115 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-1.2□□□□□ -2.6
HMGA1P17096 RPS24P1-201ENST00000438550 371 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 RNU6-274P-201ENST00000459566 107 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 AC007215.1-201ENST00000464893 276 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 AC010424.1-201ENST00000506336 297 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 RN7SKP19-201ENST00000516016 252 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC-1.2□□□□□ -2.6
HMGA1P17096 AL391840.1-201ENST00000571144 367 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 MIR3115-201ENST00000577915 68 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 MIR4676-201ENST00000583078 72 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 AL627230.5-201ENST00000619807 58 ntBASIC-1.2□□□□□ -2.6
HMGA1P17096 SNORA72.1-201ENST00000363485 129 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 Y_RNA.336-201ENST00000365307 109 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 RNU6-811P-201ENST00000384069 107 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 SNORA26.3-201ENST00000391119 136 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 MIR1298-201ENST00000408783 112 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-1.21□□□□□ -2.6
HMGA1P17096 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-1.21□□□□□ -2.6
HMGA1P17096 RNU6-948P-201ENST00000516374 107 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 RNU6-914P-201ENST00000516749 109 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC-1.21□□□□□ -2.6
HMGA1P17096 AL139286.2-201ENST00000606838 396 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 AC112204.3-201ENST00000623822 332 ntBASIC-1.21□□□□□ -2.6
HMGA1P17096 MIR655-201ENST00000362159 97 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 RNU6-1285P-201ENST00000363480 105 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 Y_RNA.265-201ENST00000364677 108 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 RNA5SP117-201ENST00000365294 118 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 Y_RNA.534-201ENST00000384599 112 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 MIR520C-201ENST00000385005 87 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-1.22□□□□□ -2.6
HMGA1P17096 AL355994.1-201ENST00000424379 260 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 MTCO2P23-201ENST00000425216 680 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 SUMO1P3-201ENST00000439961 304 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 AC016632.1-201ENST00000503994 196 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 RNU6-567P-201ENST00000516746 107 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 AC093023.1-201ENST00000547375 507 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 UBE2Q2P8-201ENST00000560644 102 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 MIR3165-201ENST00000579874 75 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 MIR4753-201ENST00000585119 83 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 AC020891.4-201ENST00000605745 93 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 AL136221.1-201ENST00000621449 509 ntBASIC-1.22□□□□□ -2.6
HMGA1P17096 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-1.23□□□□□ -2.61
HMGA1P17096 RNU6-1305P-201ENST00000364353 104 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 RNU6-40P-201ENST00000384254 107 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 MIR1283-1-201ENST00000408494 87 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 RNU7-94P-201ENST00000459576 63 ntBASIC-1.23□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms