Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC023141.11-201ENST00000508864 202 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 AC022559.1-201ENST00000520905 205 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 MIR3923-201ENST00000579521 83 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 MIR3199-1-201ENST00000582434 88 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.25□□□□□ -1.89
COL6A1P12109 MZT1P2-201ENST00000604387 248 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 uc_338.14-201ENST00000613162 166 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 AC132825.6-201ENST00000638861 357 ntBASIC3.25□□□□□ -1.89
COL6A1P12109 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.25□□□□□ -1.89
COL6A1P12109 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A1P12109 RNU1-62P-201ENST00000362599 164 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 Y_RNA.262-201ENST00000364641 102 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 MIR504-201ENST00000385065 83 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 SNORA40.19-201ENST00000390846 128 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 RNU6-1248P-201ENST00000391096 64 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 AC009969.1-201ENST00000438726 172 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 TMSB4XP3-201ENST00000445144 114 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 RPS3P1-201ENST00000456781 192 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 AL121594.1-201ENST00000475906 575 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 RNA5SP217-201ENST00000515959 91 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 MIR4524B-201ENST00000581569 115 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 MIR4506-201ENST00000584693 77 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 RNU6-91P-201ENST00000607774 107 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 AC005520.5-201ENST00000613926 164 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.24□□□□□ -1.89
COL6A1P12109 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.23□□□□□ -1.89
COL6A1P12109 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A1P12109 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.23□□□□□ -1.89
COL6A1P12109 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A1P12109 Y_RNA.240-201ENST00000364469 95 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 RNU6-923P-201ENST00000364753 107 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 Y_RNA.435-201ENST00000384095 112 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 MIR9-1-201ENST00000385198 89 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 RNU6-918P-201ENST00000391219 106 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 RPL32P35-201ENST00000415214 394 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 AC104389.3-201ENST00000445629 235 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 IFNA11P-201ENST00000446352 526 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 snoU13.26-201ENST00000459452 105 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 AC091021.1-201ENST00000468051 388 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 RN7SL442P-201ENST00000473804 320 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 AC091179.3-201ENST00000474761 144 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 AC103975.1-201ENST00000482506 483 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.23□□□□□ -1.89
COL6A1P12109 SCARNA20.6-201ENST00000517251 106 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A1P12109 AC005828.6-201ENST00000606610 232 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 AC007318.2-201ENST00000620999 243 ntBASIC3.23□□□□□ -1.89
COL6A1P12109 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A1P12109 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL6A1P12109 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.23□□□□□ -1.89
COL6A1P12109 Y_RNA.217-201ENST00000364214 105 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 Y_RNA.308-201ENST00000365043 101 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 SNORA9.2-201ENST00000365361 133 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 RNY1P5-201ENST00000383890 115 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 MIR218-1-201ENST00000384999 110 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 RNA5SP475-201ENST00000410568 110 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 AC024067.1-201ENST00000426199 223 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 Y_RNA.641-201ENST00000459414 105 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.22□□□□□ -1.89
COL6A1P12109 AC008413.1-201ENST00000511864 177 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 RNU6-155P-201ENST00000516347 100 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 RNA5SP24-201ENST00000516478 95 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 AC004467.1-201ENST00000615678 330 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 AC064859.1-201ENST00000624741 174 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 AC021753.1-201ENST00000635724 168 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 AC080128.1-201ENST00000474389 1917 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.22□□□□□ -1.89
COL6A1P12109 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A1P12109 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COL6A1P12109 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A1P12109 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL6A1P12109 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.21□□□□□ -1.9
COL6A1P12109 RNU4-80P-201ENST00000363200 141 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 MTCO2P33-201ENST00000402100 465 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AC003685.2-201ENST00000422795 395 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 RNA5SP112-201ENST00000515937 99 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 RNU5F-2P-201ENST00000516066 82 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 RNU6-191P-201ENST00000516295 94 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AC027176.1-201ENST00000560204 514 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AC055872.1-201ENST00000570978 278 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 RPS15AP11-201ENST00000594193 385 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AC006380.1-201ENST00000603598 186 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AC091152.3-201ENST00000604227 325 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AL034555.1-201ENST00000604816 211 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 AC091932.3-201ENST00000624223 323 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 MIR3674-201ENST00000636576 68 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
COL6A1P12109 AL359854.1-201ENST00000614203 1594 ntBASIC3.21□□□□□ -1.9
COL6A1P12109 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A1P12109 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A1P12109 RNU6-859P-201ENST00000362728 107 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 Y_RNA.101-201ENST00000363154 102 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 Y_RNA.170-201ENST00000363746 110 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 RNA5SP68-201ENST00000363885 119 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 Y_RNA.304-201ENST00000365011 112 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 CBX3P9-201ENST00000402326 552 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 RNU2-54P-201ENST00000410299 190 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 RNA5SP274-201ENST00000410484 108 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms