Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNA5SP364-201ENST00000516938 78 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 AC091144.1-201ENST00000519573 138 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.36□□□□□ -2.03
HMGB1P09429 AL121579.1-201ENST00000555129 305 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 FRG2DP-202ENST00000566967 323 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 MIR3937-201ENST00000580135 106 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 AC080078.2-201ENST00000603766 501 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 AC005014.2-201ENST00000607795 599 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 PISRT1.1-201ENST00000616930 107 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 AP000553.5-201ENST00000641933 54 ntBASIC2.36□□□□□ -2.03
HMGB1P09429 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.36□□□□□ -2.03
HMGB1P09429 RNU6-281P-201ENST00000384212 103 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 MIR190B-201ENST00000401119 79 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 MRPL35P1-201ENST00000404272 572 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 AC010154.1-201ENST00000425857 269 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 RPL23AP50-201ENST00000434149 455 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 RPL7P42-201ENST00000481005 679 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 MIR5089-201ENST00000580047 84 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 AC022432.1-201ENST00000595739 310 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 Y_RNA.783-201ENST00000613546 102 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 U6atac.1-201ENST00000616025 117 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 DUXAP9-208ENST00000622815 614 ntBASIC2.35□□□□□ -2.03
HMGB1P09429 RNY1P16-201ENST00000363063 111 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 RNU1-139P-201ENST00000391307 165 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.34□□□□□ -2.03
HMGB1P09429 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB1P09429 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.34□□□□□ -2.03
HMGB1P09429 RNA5SP445-201ENST00000515889 115 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 RNU7-30P-201ENST00000516835 62 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 MTND4LP26-201ENST00000518144 282 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 AC090617.3-201ENST00000573670 475 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 MIR3122-201ENST00000577243 73 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 AL929325.1-201ENST00000603096 117 ntBASIC2.34□□□□□ -2.03
HMGB1P09429 RNA5SP138-201ENST00000365098 114 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HMGB1P09429 RNU2-2P-201ENST00000410396 191 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 RNA5SP338-201ENST00000410495 85 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 RNU6-1001P-201ENST00000411265 100 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 AL161935.2-201ENST00000414627 60 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HMGB1P09429 AL135790.2-201ENST00000437701 267 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 AL606517.2-201ENST00000442855 241 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 SNORA59A-201ENST00000459326 152 ntBASIC2.33□□□□□ -2.04
HMGB1P09429 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.33□□□□□ -2.04
HMGB1P09429 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HMGB1P09429 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HMGB1P09429 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.32□□□□□ -2.04
HMGB1P09429 MTND3P10-201ENST00000450967 341 ntBASIC2.32□□□□□ -2.04
HMGB1P09429 AC091544.4-201ENST00000555268 342 ntBASIC2.32□□□□□ -2.04
HMGB1P09429 U6.108-201ENST00000637764 58 ntBASIC2.32□□□□□ -2.04
HMGB1P09429 CASC19-280ENST00000642102 1351 ntBASIC2.32□□□□□ -2.04
HMGB1P09429 RNU6-879P-201ENST00000364328 108 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 RNU6-767P-201ENST00000384132 107 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 Y_RNA.482-201ENST00000384377 111 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 RNU6-950P-201ENST00000384651 107 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 Y_RNA.595-201ENST00000410403 105 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 AC004965.1-201ENST00000413033 213 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 MTCYBP10-201ENST00000424905 650 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.31□□□□□ -2.04
HMGB1P09429 UQCRBP2-201ENST00000447827 297 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.31□□□□□ -2.04
HMGB1P09429 MIR5701-3-201ENST00000578890 82 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 MIR4648-201ENST00000580107 72 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 MIR5701-1-201ENST00000585138 82 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 MIR5701-2-201ENST00000615634 82 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 AL121890.5-201ENST00000620848 304 ntBASIC2.31□□□□□ -2.04
HMGB1P09429 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.31□□□□□ -2.04
HMGB1P09429 MIR302D-201ENST00000362275 68 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 SNORD33-201ENST00000362761 85 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 Y_RNA.160-201ENST00000363677 92 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 Y_RNA.364-201ENST00000365532 101 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 Y_RNA.619-201ENST00000410951 90 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 AC092423.1-201ENST00000430165 186 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 AC245517.4-201ENST00000448601 281 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.3□□□□□ -2.04
HMGB1P09429 RPS27P22-201ENST00000478056 241 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 RNU6-902P-201ENST00000517212 91 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 AC023157.2-201ENST00000540596 141 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.3□□□□□ -2.04
HMGB1P09429 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.3□□□□□ -2.04
HMGB1P09429 MIR4513-201ENST00000581077 86 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 U6.73-201ENST00000619194 103 ntBASIC2.3□□□□□ -2.04
HMGB1P09429 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.29□□□□□ -2.04
HMGB1P09429 Y_RNA.88-201ENST00000363029 99 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 RNA5SP259-201ENST00000365541 109 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 MIR513A1-201ENST00000385138 129 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.29□□□□□ -2.04
HMGB1P09429 SNORD65B-201ENST00000459126 73 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 AC046134.1-201ENST00000514454 666 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB1P09429 AL442163.3-201ENST00000554110 156 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 AC015688.6-201ENST00000577737 104 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 MIR3935-201ENST00000583472 104 ntBASIC2.29□□□□□ -2.04
HMGB1P09429 MIR4438-201ENST00000585271 93 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms