Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNU1-133P-201ENST00000364867 167 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.29□□□□□ -2.36
SDCBPO00560 Y_RNA.560-201ENST00000384689 102 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AC104332.1-201ENST00000440471 797 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.29□□□□□ -2.36
SDCBPO00560 RPL39P39-201ENST00000455840 151 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 RNU7-180P-201ENST00000459240 63 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 RNU6-1037P-201ENST00000459571 107 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 OR9P1P-201ENST00000496431 281 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 Y_RNA.676-201ENST00000516393 96 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 SNORA18.6-201ENST00000516792 115 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AC104576.1-201ENST00000524225 88 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AP002963.1-201ENST00000530590 184 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AC018659.1-201ENST00000551083 169 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 HIF1AP1-201ENST00000553642 175 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AL117336.2-201ENST00000602435 335 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AL357312.1-201ENST00000603879 298 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 SNRPGP20-201ENST00000604477 205 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 AC009161.2-201ENST00000624626 138 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.29□□□□□ -2.36
SDCBPO00560 AC134026.1-201ENST00000623249 2239 ntBASIC0.29□□□□□ -2.36
SDCBPO00560 U3.8-201ENST00000363675 217 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 RNY1P8-201ENST00000383970 114 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 MIR526A1-201ENST00000384897 85 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 MIR1185-2-201ENST00000408687 86 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 RNU6-248P-201ENST00000410720 107 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 MTCYBP8-201ENST00000422855 651 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 CYCSP46-201ENST00000423569 204 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.28□□□□□ -2.36
SDCBPO00560 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.28□□□□□ -2.36
SDCBPO00560 FABP5P4-201ENST00000437203 171 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 DAP3P1-201ENST00000441522 278 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.28□□□□□ -2.36
SDCBPO00560 SNRPGP9-201ENST00000456025 225 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.28□□□□□ -2.36
SDCBPO00560 MTATP6P9-201ENST00000515039 680 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 SNORA70.12-201ENST00000516084 153 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 RNA5SP220-201ENST00000516298 104 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC023827.1-201ENST00000569247 97 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 FGF7P1-201ENST00000582820 288 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AL162424.1-201ENST00000602325 221 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC011458.1-201ENST00000604034 617 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC012557.2-201ENST00000605919 418 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC087683.2-201ENST00000611384 326 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC243829.6-201ENST00000612652 106 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 HULC.1-201ENST00000612720 240 ntBASIC0.28□□□□□ -2.36
SDCBPO00560 AC005592.1-201ENST00000566527 1640 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 MIRLET7C-201ENST00000362160 84 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 RNA5SP219-201ENST00000390940 113 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 SNORD89-201ENST00000390981 114 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.27□□□□□ -2.37
SDCBPO00560 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.27□□□□□ -2.37
SDCBPO00560 MTCO2P12-201ENST00000427426 682 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.27□□□□□ -2.37
SDCBPO00560 AC133104.1-201ENST00000429100 218 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AL033528.1-201ENST00000453780 140 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.27□□□□□ -2.37
SDCBPO00560 MTND3P3-201ENST00000505004 126 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 SNORA14.1-201ENST00000516113 141 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 RNU6-496P-201ENST00000516145 99 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC106038.2-201ENST00000520706 568 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC007834.2-201ENST00000536310 343 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 SCOCP1-201ENST00000554676 349 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.27□□□□□ -2.37
SDCBPO00560 MIR3941-201ENST00000582572 103 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC131055.1-201ENST00000584626 316 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC245014.2-201ENST00000603689 287 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC246785.4-201ENST00000605374 287 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.27□□□□□ -2.37
SDCBPO00560 AC122133.1-201ENST00000613964 233 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC137590.2-201ENST00000619709 240 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 MIR6734-201ENST00000621166 68 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 AC244015.1-201ENST00000622301 99 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 FER-210ENST00000628534 558 ntTSL 5 BASIC0.27□□□□□ -2.37
SDCBPO00560 MTND5P16-201ENST00000460269 1703 ntBASIC0.27□□□□□ -2.37
SDCBPO00560 RNU6-1237P-201ENST00000384777 107 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AL663109.1-201ENST00000411498 844 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.26□□□□□ -2.37
SDCBPO00560 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.26□□□□□ -2.37
SDCBPO00560 AC244098.3-201ENST00000424803 96 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.26□□□□□ -2.37
SDCBPO00560 AC092423.1-201ENST00000430165 186 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.26□□□□□ -2.37
SDCBPO00560 AL162725.1-201ENST00000435405 301 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.26□□□□□ -2.37
SDCBPO00560 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC002350.1-201ENST00000490759 375 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.26□□□□□ -2.37
SDCBPO00560 RNU6-1129P-201ENST00000515964 104 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 SNORD111.1-201ENST00000516421 86 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 RNU6-405P-201ENST00000516637 110 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 RNU6-430P-201ENST00000517078 107 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC022868.1-201ENST00000517767 391 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.26□□□□□ -2.37
SDCBPO00560 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.26□□□□□ -2.37
SDCBPO00560 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.26□□□□□ -2.37
SDCBPO00560 SNORD11B-201ENST00000607707 90 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AL360219.1-201ENST00000610230 366 ntBASIC0.26□□□□□ -2.37
SDCBPO00560 AC093913.1-201ENST00000614178 329 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms