Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Phf7-203ENSMUST00000226565 1971 ntBASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ube3dQ8BX13 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Gm14026-201ENSMUST00000120625 1789 ntBASIC14.28□□□□□ -0.12
Ube3dQ8BX13 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Gm17807-201ENSMUST00000186869 298 ntBASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Gm45328-201ENSMUST00000210942 917 ntBASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ube3dQ8BX13 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ube3dQ8BX13 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ube3dQ8BX13 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms