Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Mir1895-201ENSMUST00000122615 79 ntBASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx55Q6ZPL9 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Mir6956-201ENSMUST00000183598 62 ntBASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx55Q6ZPL9 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx55Q6ZPL9 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx55Q6ZPL9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
Ddx55Q6ZPL9 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx55Q6ZPL9 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms