Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Gm21596-201ENSMUST00000178049 1316 ntBASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Rnf220Q6PDX6 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Alkbh1-212ENSMUST00000185301 408 ntBASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Rnf220Q6PDX6 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 AC163280.1-201ENSMUST00000228194 1100 ntBASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Rnf220Q6PDX6 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.29■□□□□ 0.04
Rnf220Q6PDX6 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Gm11249-201ENSMUST00000117071 859 ntBASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Gm12896-201ENSMUST00000118430 226 ntBASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms