Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Col28a1Q2UY11 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Gm23634-201ENSMUST00000175071 91 ntBASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Gm18959-201ENSMUST00000208954 655 ntBASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col28a1Q2UY11 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col28a1Q2UY11 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col28a1Q2UY11 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms