Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Cdx1P18111 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Cdx1P18111 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Cdx1P18111 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Ptprs-211ENSMUST00000223859 5588 ntBASIC13.02□□□□□ -0.32
Cdx1P18111 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Cdx1P18111 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.02□□□□□ -0.33
Cdx1P18111 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.02□□□□□ -0.33
Cdx1P18111 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Cdx1P18111 Gm15375-201ENSMUST00000119510 849 ntBASIC13.02□□□□□ -0.33
Cdx1P18111 Gm38285-201ENSMUST00000192928 922 ntBASIC13.02□□□□□ -0.33
Cdx1P18111 Gm43183-201ENSMUST00000200632 547 ntBASIC13.02□□□□□ -0.33
Cdx1P18111 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC13.02□□□□□ -0.33
Cdx1P18111 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Cdx1P18111 Mtag2-201ENSMUST00000058665 714 ntBASIC13.02□□□□□ -0.33
Cdx1P18111 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Cdx1P18111 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Cdx1P18111 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Cdx1P18111 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Cdx1P18111 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdx1P18111 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC13.01□□□□□ -0.33
Cdx1P18111 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC13.01□□□□□ -0.33
Cdx1P18111 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC13.01□□□□□ -0.33
Cdx1P18111 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cdx1P18111 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdx1P18111 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13□□□□□ -0.33
Cdx1P18111 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13□□□□□ -0.33
Cdx1P18111 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Gm21814-202ENSMUST00000203277 873 ntBASIC13□□□□□ -0.33
Cdx1P18111 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Gm18025-201ENSMUST00000221733 862 ntBASIC13□□□□□ -0.33
Cdx1P18111 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC13□□□□□ -0.33
Cdx1P18111 AC130671.1-201ENSMUST00000227384 1237 ntBASIC13□□□□□ -0.33
Cdx1P18111 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cdx1P18111 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cdx1P18111 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms