Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF204P-201ENST00000416749 2397 ntBASIC1.79□□□□□ -2.12
PCDHGA1Q9Y5H4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.79□□□□□ -2.12
PCDHGA1Q9Y5H4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
PCDHGA1Q9Y5H4 ZNF299P-201ENST00000406845 1804 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RNU6-595P-201ENST00000363944 107 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RNU6-17P-201ENST00000384245 107 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 Y_RNA.490-201ENST00000384413 102 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RNU6-18P-201ENST00000384527 107 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 MIR153-2-201ENST00000385225 87 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 MIR1283-1-201ENST00000408494 87 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RNA5SP100-201ENST00000410903 110 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RNA5SP59-201ENST00000410922 110 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AP1B1P2-201ENST00000416196 106 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RPS3AP52-201ENST00000435639 297 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RBMX2P4-201ENST00000441256 376 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AC107399.1-201ENST00000451226 265 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AC067942.3-201ENST00000512025 362 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AC026782.1-201ENST00000512952 449 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 RRN3P3-201ENST00000549207 578 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 SUB1P4-201ENST00000566062 339 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 7SK.7-201ENST00000603504 247 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 MIR7111-201ENST00000619751 72 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.78□□□□□ -2.12
PCDHGA1Q9Y5H4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.166-201ENST00000363730 102 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-245P-201ENST00000384020 107 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR499A-201ENST00000384903 122 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 RPL21P111-201ENST00000418453 477 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AC003989.2-201ENST00000440224 169 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AL357134.1-201ENST00000445848 426 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AC074290.1-201ENST00000448883 135 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU7-175P-201ENST00000515915 61 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 RNVU1-2-201ENST00000516326 135 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-1016P-201ENST00000516689 94 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AL590705.4-201ENST00000532209 134 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AC027288.2-201ENST00000553028 243 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 DUXAP9-208ENST00000622815 614 ntBASIC1.77□□□□□ -2.13
PCDHGA1Q9Y5H4 AC245060.5-201ENST00000610778 3293 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.319-201ENST00000365138 92 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.482-201ENST00000384377 111 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-1050P-201ENST00000410388 107 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 FTH1P12-201ENST00000432137 551 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC114982.1-201ENST00000469402 321 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 HMGN1P13-201ENST00000505795 138 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 TRMT112P2-201ENST00000512910 132 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-344P-201ENST00000516635 111 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC005668.1-201ENST00000571142 476 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC104581.2-201ENST00000572227 430 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR4753-201ENST00000585119 83 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR502-201ENST00000606349 86 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC022306.2-201ENST00000617563 647 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 AC022513.1-201ENST00000624512 117 ntBASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PCDHGA1Q9Y5H4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.184-201ENST00000363884 108 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-418P-201ENST00000384035 107 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 SNORA67.2-201ENST00000384300 149 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR586-201ENST00000385035 97 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU4-62P-201ENST00000410125 130 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.594-201ENST00000410373 140 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 RPL37P10-201ENST00000412884 288 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 PDCL2P1-201ENST00000419302 352 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 RN7SL274P-201ENST00000492268 272 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 AC005840.1-201ENST00000498412 377 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 PRDX4P1-201ENST00000507189 574 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 AC097473.1-201ENST00000508142 408 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.670-201ENST00000516255 105 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-948P-201ENST00000516374 107 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 CBX3P8-201ENST00000532412 525 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR4285-201ENST00000581001 85 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 MIR8070-201ENST00000616510 88 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 AL159152.1-201ENST00000635019 2587 ntBASIC1.75□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.48-201ENST00000362710 103 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.88-201ENST00000363029 99 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU4-42P-201ENST00000364738 142 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.405-201ENST00000383979 100 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.451-201ENST00000384200 100 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-975P-201ENST00000384296 105 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-601P-201ENST00000384540 107 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.524-201ENST00000384564 100 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 Y_RNA.561-201ENST00000384694 100 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-541P-201ENST00000384709 110 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 RNU6-159P-201ENST00000391080 106 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 SUMO2P12-201ENST00000405924 140 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 AC138393.2-201ENST00000414742 246 ntBASIC1.74□□□□□ -2.13
PCDHGA1Q9Y5H4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms