Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MIR8062-201ENST00000621515 85 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC062016.1-201ENST00000355719 319 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 Y_RNA.143-201ENST00000363520 106 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 SNORA80A-201ENST00000363922 136 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-234P-201ENST00000365229 104 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AL359511.1-201ENST00000402970 211 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC004866.1-201ENST00000411748 78 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC092427.1-202ENST00000430569 476 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC104389.3-201ENST00000445629 235 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC108938.1-201ENST00000451204 136 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 LINC01399-202ENST00000458450 244 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 RPPH1-2P-201ENST00000516688 293 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-1098P-201ENST00000516772 96 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AK6P2-201ENST00000549020 471 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 MIR3149-201ENST00000584629 83 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 MIR7106-201ENST00000612419 65 ntBASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
LIMCH1Q9UPQ0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.96
LIMCH1Q9UPQ0 AC016717.2-201ENST00000609089 5141 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-626P-201ENST00000363354 107 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-727P-201ENST00000363592 107 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RNU1-51P-201ENST00000365345 176 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 Y_RNA.401-201ENST00000383965 117 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-1026P-201ENST00000384465 108 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 MIR586-201ENST00000385035 97 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 AL139095.1-201ENST00000404326 391 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RNU2-32P-201ENST00000411193 191 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-625P-201ENST00000459412 107 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 AL049873.1-201ENST00000480540 376 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 AP003733.2-201ENST00000529409 171 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 RRN3P3-201ENST00000549207 578 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4319-201ENST00000577285 85 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4446-201ENST00000578505 67 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 AL357075.2-201ENST00000614906 189 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.83□□□□□ -1.96
LIMCH1Q9UPQ0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 MIR410-201ENST00000362222 80 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 U3.8-201ENST00000363675 217 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 Y_RNA.193-201ENST00000363979 102 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 Y_RNA.415-201ENST00000384012 112 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 MIR1302-6-201ENST00000408466 90 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC096920.1-201ENST00000423991 241 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC005002.2-201ENST00000438228 269 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC074290.1-201ENST00000448883 135 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 RNU7-14P-201ENST00000459331 62 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC109329.2-201ENST00000519658 482 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC006006.1-201ENST00000603082 144 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 AC008873.1-201ENST00000625051 138 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 SCARNA15.3-201ENST00000626315 122 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 SCARNA4.1-201ENST00000628597 123 ntBASIC2.82□□□□□ -1.96
LIMCH1Q9UPQ0 Y_RNA.64-201ENST00000362845 102 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-961P-201ENST00000363893 105 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 SNORD31B-201ENST00000364977 69 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-702P-201ENST00000364982 107 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-1264P-201ENST00000383891 107 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 RNU6-20P-201ENST00000384106 107 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 MIR196B-201ENST00000384852 84 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 ELOCP21-201ENST00000412558 336 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 CR769767.1-201ENST00000436337 346 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 AC114982.1-201ENST00000469402 321 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 RNA5SP356-201ENST00000515972 94 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 AC136932.1-201ENST00000574771 208 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4423-201ENST00000580922 80 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 MIR4300-201ENST00000581016 96 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 AC005176.2-201ENST00000596933 147 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 U4atac.1-201ENST00000618345 95 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 MIR1291-201ENST00000627649 87 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 AC135776.4-201ENST00000624300 1904 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 ZNF271P-202ENST00000465539 1970 ntBASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LIMCH1Q9UPQ0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
LIMCH1Q9UPQ0 SNORA5B-201ENST00000363786 132 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms