Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 USP9YP30-201ENST00000430729 455 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 RN7SL274P-201ENST00000492268 272 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 AC005668.1-201ENST00000571142 476 ntBASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SHROOM4Q9ULL8 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
SHROOM4Q9ULL8 MTND1P2-201ENST00000430604 821 ntBASIC3.09□□□□□ -1.92
SHROOM4Q9ULL8 AC009237.7-201ENST00000447357 229 ntBASIC3.09□□□□□ -1.92
SHROOM4Q9ULL8 PVT1_3.1-201ENST00000620853 95 ntBASIC3.09□□□□□ -1.92
SHROOM4Q9ULL8 SNORD115-8-201ENST00000363856 82 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 SNORD115-38-201ENST00000365037 82 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-245P-201ENST00000384020 107 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-767P-201ENST00000384132 107 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 Y_RNA.490-201ENST00000384413 102 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AL356776.1-201ENST00000406574 447 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 RNA5SP501-201ENST00000410990 112 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AC107399.1-201ENST00000451226 265 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AC114982.1-201ENST00000469402 321 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AL590705.4-201ENST00000532209 134 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 MIR3935-201ENST00000583472 104 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AC005296.1-201ENST00000616145 209 ntBASIC3.08□□□□□ -1.92
SHROOM4Q9ULL8 AL159152.1-201ENST00000635019 2587 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 SNORA7.1-201ENST00000363750 139 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-593P-201ENST00000364716 112 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 AC244636.1-201ENST00000421152 228 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 MTCO1P44-201ENST00000441935 243 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 AC074290.1-201ENST00000448883 135 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 MTND5P5-201ENST00000503764 376 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-58P-201ENST00000517143 103 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 AC010928.2-201ENST00000588017 287 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 AL133216.2-202ENST00000634512 349 ntBASIC3.07□□□□□ -1.92
SHROOM4Q9ULL8 MTND4P1-201ENST00000457501 1466 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 RNU5F-3P-201ENST00000363767 117 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-60P-201ENST00000364792 103 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 Z82188.1-201ENST00000436709 154 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 AL357134.1-201ENST00000445848 426 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 RNU7-30P-201ENST00000516835 62 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 MIR4299-201ENST00000577899 72 ntBASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
SHROOM4Q9ULL8 Y_RNA.2-201ENST00000362330 96 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-845P-201ENST00000362578 103 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-418P-201ENST00000384035 107 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 MT-TL1-201ENST00000386347 75 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 MIR548K-201ENST00000408406 116 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 USMG5P1-201ENST00000425964 177 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 AC067942.3-201ENST00000512025 362 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 ZNF299P-201ENST00000406845 1804 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 AC006026.1-201ENST00000444025 1803 ntBASIC3.05□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-280P-201ENST00000364145 104 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 SNORA8-201ENST00000384574 139 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 Y_RNA.533-201ENST00000384596 114 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 MIR549A-201ENST00000385268 96 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 RN7SKP101-201ENST00000411376 320 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 SNORA25.14-201ENST00000516481 132 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 RNU2-34P-201ENST00000516534 121 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 DEFB131C-201ENST00000528817 165 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 AC015720.1-201ENST00000565251 277 ntBASIC3.04□□□□□ -1.92
SHROOM4Q9ULL8 RNU1-42P-201ENST00000364033 160 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-876P-201ENST00000391295 104 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 MTND1P23-201ENST00000416931 372 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 NCOR1P3-201ENST00000420479 303 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-344P-201ENST00000516635 111 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 SUMO2P18-201ENST00000518873 252 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 SNORD53B-201ENST00000577887 78 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 AC018462.2-201ENST00000605375 395 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 DUXAP9-208ENST00000622815 614 ntBASIC3.03□□□□□ -1.92
SHROOM4Q9ULL8 RNU6-595P-201ENST00000363944 107 ntBASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 RNU6-17P-201ENST00000384245 107 ntBASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 RNU6-18P-201ENST00000384527 107 ntBASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 RPL37P10-201ENST00000412884 288 ntBASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 AC243428.1-201ENST00000421099 264 ntBASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.03□□□□□ -1.93
SHROOM4Q9ULL8 Y_RNA.160-201ENST00000363677 92 ntBASIC3.02□□□□□ -1.93
SHROOM4Q9ULL8 RNU6-1305P-201ENST00000364353 104 ntBASIC3.02□□□□□ -1.93
SHROOM4Q9ULL8 Y_RNA.319-201ENST00000365138 92 ntBASIC3.02□□□□□ -1.93
SHROOM4Q9ULL8 Y_RNA.482-201ENST00000384377 111 ntBASIC3.02□□□□□ -1.93
SHROOM4Q9ULL8 SNORA48.1-201ENST00000390879 135 ntBASIC3.02□□□□□ -1.93
SHROOM4Q9ULL8 SUMO2P12-201ENST00000405924 140 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms