Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC009969.1-201ENST00000438726 172 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 OR9P1P-201ENST00000496431 281 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 SNORA4.4-201ENST00000515921 135 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 RNU6-1061P-201ENST00000516530 99 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 AC011604.1-201ENST00000545978 196 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 AC091167.4-201ENST00000605079 184 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
LIMD1Q9UGP4 AC080128.1-201ENST00000474389 1917 ntBASIC4.15□□□□□ -1.74
LIMD1Q9UGP4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.74
LIMD1Q9UGP4 AC103988.1-201ENST00000566382 2177 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 SNORA40.5-201ENST00000391061 128 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 RPL29P14-201ENST00000495837 428 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 AC025445.1-201ENST00000502728 300 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.690-201ENST00000516603 95 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 SCARNA3-201ENST00000517097 143 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 RMST_8.1-201ENST00000610287 165 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 uc_338.32-201ENST00000615087 172 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 MIR5739-201ENST00000619803 80 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 U6.105-201ENST00000637379 88 ntBASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
LIMD1Q9UGP4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 AL355596.1-201ENST00000565399 3996 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 SNORD35B-201ENST00000363660 87 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.796-201ENST00000364268 102 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.799-201ENST00000364992 102 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 SNORA22-201ENST00000383907 134 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 MIR562-201ENST00000384894 95 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 MIR1253-201ENST00000408273 105 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 DBIP2-201ENST00000419076 262 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 AL035423.1-201ENST00000420331 213 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 ABCF2P2-201ENST00000450549 296 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 SNORA18.4-201ENST00000516440 124 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 Pinc.1-201ENST00000616452 154 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.14□□□□□ -1.75
LIMD1Q9UGP4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.91-201ENST00000363042 107 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RNU6-1209P-201ENST00000363655 107 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RNA5SP267-201ENST00000364893 126 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RNA5SP97-201ENST00000365006 84 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 MIR520G-201ENST00000385064 90 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RNA5SP127-201ENST00000411051 133 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 MTATP6P21-201ENST00000440681 189 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 CYP2C59P-201ENST00000457790 269 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RN7SL293P-201ENST00000481765 281 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 RNU7-149P-201ENST00000516739 59 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 AC087499.8-201ENST00000578406 226 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 MIR3922-201ENST00000585192 84 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 U3.45-201ENST00000607547 219 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 AC018555.1-201ENST00000567548 1980 ntBASIC4.13□□□□□ -1.75
LIMD1Q9UGP4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 ZNF962P-201ENST00000443465 3140 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MIR624-201ENST00000385217 97 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 AC104619.4-201ENST00000510773 249 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 RNU6-1146P-201ENST00000516282 102 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 RNU6-965P-201ENST00000516721 96 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 RNU6-365P-201ENST00000517113 106 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 NDUFA5P6-201ENST00000542110 379 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MIR4679-2-201ENST00000578358 77 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MIR5195-201ENST00000583555 115 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MIR432-201ENST00000606207 94 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 AC107294.3-201ENST00000609211 526 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MIR1248-201ENST00000629190 106 ntBASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MFSD8-236ENST00000641509 4050 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms