Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 Z96811.1-201ENST00000445880 108 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 EEF1B2P7-201ENST00000451177 676 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 RNU7-14P-201ENST00000459331 62 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 AC003982.1-202ENST00000469928 248 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.8□□□□□ -1.96
TDP1Q9NUW8 RNU6-107P-201ENST00000516643 102 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 RNU7-110P-201ENST00000516891 62 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
TDP1Q9NUW8 AC110588.1-201ENST00000559699 137 ntBASIC2.8□□□□□ -1.96
TDP1Q9NUW8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
TDP1Q9NUW8 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
TDP1Q9NUW8 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
TDP1Q9NUW8 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
TDP1Q9NUW8 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
TDP1Q9NUW8 Y_RNA.188-201ENST00000363952 111 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 Y_RNA.286-201ENST00000364813 102 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 Y_RNA.307-201ENST00000365022 117 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 RNU6-1175P-201ENST00000365200 107 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 RNA5SP240-201ENST00000365355 128 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 RNU6-546P-201ENST00000383991 107 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 MT-TG-201ENST00000387429 68 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 RN7SKP123-201ENST00000410732 291 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 RNU2-63P-201ENST00000410792 194 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 AL445687.1-201ENST00000439946 251 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 HSPE1P25-201ENST00000455484 251 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 RNU6-1132P-201ENST00000459214 107 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.79□□□□□ -1.96
TDP1Q9NUW8 ATP5EP1-201ENST00000510257 156 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 SNORA48.11-201ENST00000517015 89 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 AC109329.2-201ENST00000519658 482 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.79□□□□□ -1.96
TDP1Q9NUW8 SNORD113-5-201ENST00000607261 78 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 AC013412.1-201ENST00000610687 192 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 MIR6817-201ENST00000615588 66 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 MIR1248-201ENST00000629190 106 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 MIR3674-201ENST00000636576 68 ntBASIC2.79□□□□□ -1.96
TDP1Q9NUW8 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TDP1Q9NUW8 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
TDP1Q9NUW8 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 MIR410-201ENST00000362222 80 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 Y_RNA.16-201ENST00000362421 102 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 RNU6-545P-201ENST00000362681 104 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 SNORD81.1-201ENST00000363064 77 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 RNU6-1305P-201ENST00000364353 104 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 SNORA72.2-201ENST00000365028 127 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 RNU6-1264P-201ENST00000383891 107 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 RNU6-21P-201ENST00000384710 107 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 MIR586-201ENST00000385035 97 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AL390729.2-201ENST00000416137 156 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC003685.2-201ENST00000422795 395 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC244505.4-201ENST00000434905 287 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 SSXP5-201ENST00000443473 287 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 SEPT14P8-201ENST00000508026 178 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC107222.1-201ENST00000510899 637 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC022616.8-201ENST00000533569 253 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 MIR3605-201ENST00000583214 100 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AL109918.3-201ENST00000603072 338 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AL355297.2-201ENST00000604792 129 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC004467.1-201ENST00000615678 330 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 AC091932.3-201ENST00000624223 323 ntBASIC2.78□□□□□ -1.96
TDP1Q9NUW8 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
TDP1Q9NUW8 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.77□□□□□ -1.97
TDP1Q9NUW8 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
TDP1Q9NUW8 RNU4-90P-201ENST00000362773 141 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 Y_RNA.101-201ENST00000363154 102 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 U3.8-201ENST00000363675 217 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 Y_RNA.237-201ENST00000364439 102 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 RNA5SP125-201ENST00000364843 120 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 MIR181A2-201ENST00000384863 110 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 AL451074.5-201ENST00000415894 435 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 AL513328.1-201ENST00000446460 224 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 AP004217.1-201ENST00000480579 346 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 HMGB3P17-201ENST00000504195 649 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.77□□□□□ -1.97
TDP1Q9NUW8 RNU6-1271P-201ENST00000517049 105 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 DEFB108E-201ENST00000524692 240 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 AC022441.3-201ENST00000605737 136 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.77□□□□□ -1.97
TDP1Q9NUW8 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.77□□□□□ -1.97
TDP1Q9NUW8 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
TDP1Q9NUW8 Y_RNA.14-201ENST00000362415 103 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 SNORA51.4-201ENST00000364993 124 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNU6-290P-201ENST00000365212 101 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNU6-1310P-201ENST00000384153 107 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNU6-1026P-201ENST00000384465 108 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNA5SP475-201ENST00000410568 110 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNA5SP508-201ENST00000411327 119 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 AC092427.1-202ENST00000430569 476 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 HMGN2P9-201ENST00000476875 229 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNU6-1338P-201ENST00000516328 91 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNU6-966P-201ENST00000516479 104 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 RNA5SP148-201ENST00000516527 94 ntBASIC2.76□□□□□ -1.97
TDP1Q9NUW8 AC007536.1-201ENST00000533382 349 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms