Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MIR4424-201ENST00000585257 86 ntBASIC0.6□□□□□ -2.31
VCX3AQ9NNX9 AC137590.2-201ENST00000619709 240 ntBASIC0.6□□□□□ -2.31
VCX3AQ9NNX9 AC005609.4-201ENST00000625071 447 ntBASIC0.6□□□□□ -2.31
VCX3AQ9NNX9 RNU6-1329P-201ENST00000365664 107 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AL606923.1-201ENST00000406616 190 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 RNU4-62P-201ENST00000410125 130 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AL445305.1-201ENST00000432577 575 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 MTCO2P18-201ENST00000457151 658 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 RNU7-99P-201ENST00000516271 62 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 MTND1P5-201ENST00000517906 940 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 MTCO2P4-201ENST00000517968 247 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 MTND1P35-201ENST00000526739 508 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 APOOP3-201ENST00000536787 586 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AC004223.2-201ENST00000590309 544 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AC108706.1-201ENST00000611053 297 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 AL603755.1-201ENST00000619504 163 ntBASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.59□□□□□ -2.31
VCX3AQ9NNX9 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC0.59□□□□□ -2.32
VCX3AQ9NNX9 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 SNORA75.2-201ENST00000391138 150 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 SNORA75.3-201ENST00000391231 150 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AL049545.1-201ENST00000401856 572 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AL451046.2-201ENST00000403074 277 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 CALM2P4-201ENST00000430810 426 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AL035398.1-201ENST00000430869 322 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 RNU6-189P-201ENST00000516120 101 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AC087854.1-201ENST00000519706 414 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AL137100.2-201ENST00000555786 315 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AC040904.1-201ENST00000590850 223 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AL162424.1-201ENST00000602325 221 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AC104465.1-201ENST00000611365 139 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 AC103705.1-201ENST00000619013 241 ntBASIC0.58□□□□□ -2.32
VCX3AQ9NNX9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 SNORD87-201ENST00000364849 89 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 MIR320B2-201ENST00000408479 138 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 MIR1185-2-201ENST00000408687 86 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AP1B1P2-201ENST00000416196 106 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 RPEP5-201ENST00000441137 268 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 COX6CP6-201ENST00000490840 228 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AP002001.1-203ENST00000534002 267 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AK6P2-201ENST00000549020 471 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AL353765.1-201ENST00000605514 183 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 SNORD11B-201ENST00000607707 90 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 AC091931.1-201ENST00000623488 728 ntBASIC0.57□□□□□ -2.32
VCX3AQ9NNX9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AL391987.6-201ENST00000305671 199 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RNU6-1335P-201ENST00000365426 107 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RNU6-348P-201ENST00000384386 107 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RNU6-1158P-201ENST00000391167 107 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 U8.16-201ENST00000391279 133 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 MTCO2P19-201ENST00000427513 598 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AC093850.1-201ENST00000454121 251 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RPL39P39-201ENST00000455840 151 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 TPTE2P5-203ENST00000458118 728 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RPS27P22-201ENST00000478056 241 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RPL23AP75-201ENST00000491601 451 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 RNU6-1038P-201ENST00000516516 104 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AL118558.2-201ENST00000556294 238 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 MIR4781-201ENST00000585250 76 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AC092747.3-201ENST00000603769 301 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AL590095.2-201ENST00000604136 117 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 PRELID3BP2-201ENST00000605362 201 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AL357078.3-201ENST00000607528 618 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 AL354950.2-201ENST00000617939 290 ntBASIC0.56□□□□□ -2.32
VCX3AQ9NNX9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 SNORA2.2-201ENST00000365473 135 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 Y_RNA.381-201ENST00000365666 102 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 RNU5A-6P-201ENST00000384136 116 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 SNORD116-13-201ENST00000384408 92 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 RNU6-325P-201ENST00000411132 105 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 RN7SKP142-201ENST00000411236 328 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AL663109.1-201ENST00000411498 844 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AL353193.1-201ENST00000421444 268 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC004941.2-201ENST00000427009 228 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC073464.1-201ENST00000429823 534 ntBASIC0.55□□□□□ -2.32
VCX3AQ9NNX9 AC010095.1-201ENST00000443543 144 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms