Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.2-201ENST00000362330 96 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.319-201ENST00000365138 92 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.338-201ENST00000365320 114 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 RNU6-418P-201ENST00000384035 107 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 SNORA67.2-201ENST00000384300 149 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 RNU6-331P-201ENST00000384724 107 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 MIR153-2-201ENST00000385225 87 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 RNA5SP504-201ENST00000410676 117 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AC098614.3-201ENST00000438957 440 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 RNU1-131P-201ENST00000458943 161 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 RNVU1-2-201ENST00000516326 135 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AL590705.4-201ENST00000532209 134 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 GNAI2P1-201ENST00000541815 315 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 SNRPGP20-201ENST00000604477 205 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AL355802.3-201ENST00000607571 545 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AL355073.2-201ENST00000612106 557 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AC006026.1-201ENST00000444025 1803 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 AC245060.5-201ENST00000610778 3293 ntBASIC1.79□□□□□ -2.12
RPF1Q9H9Y2 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 AC108667.1-201ENST00000428618 249 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 AC016717.1-201ENST00000448918 286 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 AC007395.1-201ENST00000451333 677 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 AP000870.1-201ENST00000472927 406 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 HMGN2P9-201ENST00000476875 229 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 Y_RNA.708-201ENST00000516950 96 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 CBX3P4-201ENST00000538909 354 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 MIR5701-3-201ENST00000578890 82 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 MIR5701-1-201ENST00000585138 82 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 AC016727.1-205ENST00000605437 569 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 MIR5701-2-201ENST00000615634 82 ntBASIC1.78□□□□□ -2.12
RPF1Q9H9Y2 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 MTND4P12-201ENST00000498999 1377 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 RNU6-873P-201ENST00000363833 107 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.474-201ENST00000384341 102 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 MIR300-201ENST00000401138 83 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 RNU6-1304P-201ENST00000411374 106 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 AL353997.1-201ENST00000432936 108 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 RN7SKP210-201ENST00000459176 261 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 RNU7-175P-201ENST00000515915 61 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 RNA5SP54-201ENST00000516951 92 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 AC005786.1-201ENST00000588553 154 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 AC010900.2-201ENST00000604508 210 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.77□□□□□ -2.13
RPF1Q9H9Y2 RNU6-874P-201ENST00000362390 105 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 RNU6-222P-201ENST00000362438 107 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.132-201ENST00000363421 102 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 SNORA67.5-201ENST00000391036 107 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 RNU6-159P-201ENST00000391080 106 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 SNORA75.4-201ENST00000391278 119 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 MTND3P23-201ENST00000431980 347 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 AC108729.3-201ENST00000513484 108 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 SNORA25.14-201ENST00000516481 132 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 SCARNA16.2-201ENST00000516520 172 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 AC005730.3-201ENST00000583067 366 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 AC103810.8-201ENST00000607347 118 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 uc_338.20-201ENST00000621563 178 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 AC099654.5-201ENST00000636479 350 ntBASIC1.76□□□□□ -2.13
RPF1Q9H9Y2 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 SNORA72.1-201ENST00000363485 129 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-457P-201ENST00000363999 107 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-1305P-201ENST00000364353 104 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-245P-201ENST00000384020 107 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-975P-201ENST00000384296 105 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.490-201ENST00000384413 102 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-541P-201ENST00000384709 110 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 MIR10B-201ENST00000385011 110 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.595-201ENST00000410403 105 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RN7SKP101-201ENST00000411376 320 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC060773.1-201ENST00000421698 310 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AL357134.1-201ENST00000445848 426 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC097473.1-201ENST00000508142 408 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC067942.3-201ENST00000512025 362 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-120P-201ENST00000516077 103 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU6-344P-201ENST00000516635 111 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RNU1-117P-201ENST00000517041 158 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC105029.1-201ENST00000520250 669 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC134698.4-201ENST00000523451 826 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AK6P2-201ENST00000549020 471 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 MIR4801-201ENST00000582704 82 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 MIR4753-201ENST00000585119 83 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 RBM11P1-201ENST00000604951 799 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AC083806.3-201ENST00000614016 455 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 211.3 ms