Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
PCIF1Q9H4Z3 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 SNORA25.1-201ENST00000362326 128 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.44-201ENST00000362676 108 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.111-201ENST00000363248 100 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.136-201ENST00000363444 102 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-234P-201ENST00000365229 104 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.515-201ENST00000384535 112 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 FO393413.1-201ENST00000402892 195 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 RNA5SP475-201ENST00000410568 110 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 TRIAP1P1-201ENST00000427062 225 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 AC080013.2-201ENST00000460866 323 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 HMGN2P9-201ENST00000476875 229 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 ATP5EP1-201ENST00000510257 156 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 RNA5SP367-201ENST00000516557 118 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 RNU2-12P-201ENST00000517216 168 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 MIR3145-201ENST00000580727 82 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 AC037487.3-201ENST00000606668 112 ntBASIC3.02□□□□□ -1.93
PCIF1Q9H4Z3 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-545P-201ENST00000362681 104 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.65-201ENST00000362846 100 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-1305P-201ENST00000364353 104 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.269-201ENST00000364685 89 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 MIR586-201ENST00000385035 97 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 AC009963.1-201ENST00000417265 157 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 TOMM22P2-201ENST00000430735 237 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 AC107083.1-201ENST00000439643 279 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 AC091959.1-201ENST00000495857 238 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 RPL21P9-201ENST00000556149 474 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 LARP7P3-201ENST00000579888 337 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 BX284668.6-201ENST00000606899 438 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.01□□□□□ -1.93
PCIF1Q9H4Z3 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 U3.8-201ENST00000363675 217 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-461P-201ENST00000364195 107 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 SNORA51.4-201ENST00000364993 124 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 MIR548B-201ENST00000385247 97 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-220P-201ENST00000390919 107 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 AL138827.1-201ENST00000402666 306 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 RNU7-14P-201ENST00000459331 62 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-965P-201ENST00000516721 96 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 AC009779.6-201ENST00000603972 165 ntBASIC3□□□□□ -1.93
PCIF1Q9H4Z3 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
PCIF1Q9H4Z3 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 MIR26A1-201ENST00000362205 77 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 SNORA80A-201ENST00000363922 136 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 RNY1-201ENST00000364228 113 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-514P-201ENST00000384208 107 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 MIR95-201ENST00000385072 81 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 BMS1P22-201ENST00000414726 313 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 Z98949.2-201ENST00000440996 144 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 NDUFB4P10-201ENST00000452541 359 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 AC109329.2-201ENST00000519658 482 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 DEFB117-201ENST00000602356 141 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 AL442067.1-201ENST00000613261 223 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 Z82209.1-201ENST00000422141 2135 ntBASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
PCIF1Q9H4Z3 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RNU4-80P-201ENST00000363200 141 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RNU1-23P-201ENST00000363361 144 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.275-201ENST00000364726 110 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-740P-201ENST00000364734 105 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 DYNLT3P1-201ENST00000378574 347 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 MIR1283-1-201ENST00000408494 87 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RN7SKP123-201ENST00000410732 291 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 AC105272.1-201ENST00000438604 198 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 AC006483.1-201ENST00000487308 313 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-138P-201ENST00000515952 107 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RNU4-71P-201ENST00000516258 113 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 GTF3AP2-201ENST00000557014 266 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 MIR3605-201ENST00000583214 100 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 MIR5739-201ENST00000619803 80 ntBASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.98□□□□□ -1.93
PCIF1Q9H4Z3 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 Y_RNA.76-201ENST00000362931 109 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 AL139095.1-201ENST00000404326 391 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 RNU6-651P-201ENST00000411040 105 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 AL161788.1-201ENST00000441805 169 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 SNORA9.3-201ENST00000516383 129 ntBASIC2.97□□□□□ -1.93
PCIF1Q9H4Z3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms