Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC021231.3-201ENST00000558497 370 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AC004584.2-201ENST00000570407 410 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AC104581.2-201ENST00000572227 430 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 MIR3935-201ENST00000583472 104 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RPL30P11-203ENST00000598995 310 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 SNORD58B-201ENST00000607313 66 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 RNU6-222P-201ENST00000362438 107 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.28-201ENST00000362554 111 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.80-201ENST00000362996 102 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 RNU6-142P-201ENST00000384019 107 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 RNU6-378P-201ENST00000384324 107 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.485-201ENST00000384395 102 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC096644.2-201ENST00000429278 159 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AL160004.2-201ENST00000432935 350 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 snoU13.30-201ENST00000458951 104 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC140059.1-201ENST00000489238 361 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 SCARNA15.1-201ENST00000516384 125 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 RNU7-193P-201ENST00000516723 65 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 RNU6-1137P-201ENST00000517073 99 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC027288.2-201ENST00000553028 243 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 MIR3136-201ENST00000583498 78 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 AC005520.5-201ENST00000613926 164 ntBASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
UPF3AQ9H1J1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2□□□□□ -2.09
UPF3AQ9H1J1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2□□□□□ -2.09
UPF3AQ9H1J1 SNORD115-32-201ENST00000364079 82 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 RNU4-42P-201ENST00000364738 142 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 MIR32-201ENST00000384965 70 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2□□□□□ -2.09
UPF3AQ9H1J1 SNORA12-201ENST00000391162 147 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 MIR190B-201ENST00000401119 79 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 MTCYBP2-201ENST00000407745 171 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 U6atac.2-201ENST00000408644 118 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 RPS26P42-201ENST00000413485 326 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2□□□□□ -2.09
UPF3AQ9H1J1 AC092423.1-201ENST00000430165 186 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2□□□□□ -2.09
UPF3AQ9H1J1 RPL22P13-201ENST00000493291 347 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2□□□□□ -2.09
UPF3AQ9H1J1 RNU6-264P-201ENST00000517134 104 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 DEFB131C-201ENST00000528817 165 ntBASIC2□□□□□ -2.09
UPF3AQ9H1J1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.106-201ENST00000363189 100 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 RNU6-944P-201ENST00000364023 107 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 RNU6-1274P-201ENST00000384557 107 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.645-201ENST00000391229 102 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 RNU2-40P-201ENST00000410833 196 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 MTCYBP10-201ENST00000424905 650 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AL445305.1-201ENST00000432577 575 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 OR2AQ1P-201ENST00000451972 200 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AC145146.1-201ENST00000496370 254 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 SNORD116.3-201ENST00000517176 78 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 CYP4A27P-201ENST00000567218 190 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 MIR4303-201ENST00000581299 66 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AC105245.1-201ENST00000581934 244 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AC092447.9-201ENST00000603395 144 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 PCGEM1.1-201ENST00000613431 131 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AC040896.1-201ENST00000613819 479 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 MIR4272-201ENST00000635924 64 ntBASIC1.99□□□□□ -2.09
UPF3AQ9H1J1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.314-201ENST00000365114 102 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 RNU1-115P-201ENST00000365329 160 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 SNORA33.2-201ENST00000365413 134 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 Y_RNA.428-201ENST00000384078 102 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 RNU6-708P-201ENST00000384217 107 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 SNORA46.1-201ENST00000391069 153 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC004866.1-201ENST00000411748 78 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC099799.1-201ENST00000439809 192 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AP000870.1-201ENST00000472927 406 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 RNU7-175P-201ENST00000515915 61 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 UBL5P4-201ENST00000562584 236 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 MIR4448-201ENST00000584360 86 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC007229.1-201ENST00000590455 412 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC016727.2-201ENST00000603988 621 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AL670379.2-201ENST00000604983 252 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AL359821.1-201ENST00000605519 182 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC100812.1-201ENST00000607622 580 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 AC006157.1-201ENST00000611750 366 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 RMST_6.1-201ENST00000611980 203 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 SDR42E1P4-201ENST00000620894 481 ntBASIC1.98□□□□□ -2.09
UPF3AQ9H1J1 uc_338.20-201ENST00000621563 178 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms