Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 Y_RNA.720-201ENST00000517166 92 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 NDUFA5P6-201ENST00000542110 379 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 AC113195.1-201ENST00000579952 141 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 MIR4672-201ENST00000583126 81 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 MIR6852-201ENST00000621699 66 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 AC130454.1-201ENST00000622948 401 ntBASIC2.33□□□□□ -2.04
NPAS1Q99742 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
NPAS1Q99742 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS1Q99742 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.32□□□□□ -2.04
NPAS1Q99742 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
NPAS1Q99742 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.32□□□□□ -2.04
NPAS1Q99742 Y_RNA.145-201ENST00000363527 102 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 RNU6-1310P-201ENST00000384153 107 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 MIR196B-201ENST00000384852 84 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 MIR586-201ENST00000385035 97 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 MIR23A-201ENST00000385245 73 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
NPAS1Q99742 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 SRIP3-201ENST00000413200 219 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 EDDM3CP-201ENST00000415977 425 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 AC009963.1-201ENST00000417265 157 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 AC123900.1-201ENST00000420390 96 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 MTND2P23-201ENST00000422990 651 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 AC016717.1-201ENST00000448918 286 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 AC096725.1-201ENST00000514266 313 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 RNY3P15-201ENST00000516297 97 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 AC131281.1-201ENST00000522984 164 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.32□□□□□ -2.04
NPAS1Q99742 MYL12BP1-201ENST00000569826 507 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.32□□□□□ -2.04
NPAS1Q99742 AC006023.1-201ENST00000603944 259 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 PART1_1.1-201ENST00000611761 217 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 AC022202.1-201ENST00000613515 211 ntBASIC2.32□□□□□ -2.04
NPAS1Q99742 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS1Q99742 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS1Q99742 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS1Q99742 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS1Q99742 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
NPAS1Q99742 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
NPAS1Q99742 MAPK10-266ENST00000641066 6555 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.31□□□□□ -2.04
NPAS1Q99742 RNU6-626P-201ENST00000363354 107 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 Y_RNA.143-201ENST00000363520 106 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 U3.8-201ENST00000363675 217 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 Y_RNA.210-201ENST00000364161 110 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 SNORA63C-201ENST00000364578 129 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 SNORD14D-201ENST00000384390 87 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 MIR548B-201ENST00000385247 97 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.31□□□□□ -2.04
NPAS1Q99742 RNU6-57P-201ENST00000411348 103 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 AC139712.2-201ENST00000424302 339 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 RPEP5-201ENST00000441137 268 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 HMGN2P9-201ENST00000476875 229 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 AC107222.1-201ENST00000510899 637 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 RNU6-1045P-201ENST00000516321 107 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 RNA5SP148-201ENST00000516527 94 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.31□□□□□ -2.04
NPAS1Q99742 AC233702.2-202ENST00000562547 291 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
NPAS1Q99742 AL031274.2-201ENST00000599419 203 ntBASIC2.31□□□□□ -2.04
NPAS1Q99742 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.31□□□□□ -2.04
NPAS1Q99742 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
NPAS1Q99742 RNA5SP68-201ENST00000363885 119 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 RNU1-148P-201ENST00000384472 162 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 RNU6-738P-201ENST00000384531 106 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 MIR518C-201ENST00000384822 101 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
NPAS1Q99742 AL079342.1-201ENST00000401460 267 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 AC007064.1-201ENST00000412238 351 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.3□□□□□ -2.04
NPAS1Q99742 AL139109.1-201ENST00000455491 297 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 AC016925.1-201ENST00000458303 298 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.3□□□□□ -2.04
NPAS1Q99742 AC005176.2-201ENST00000596933 147 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 AL355297.3-201ENST00000604082 446 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 MIR6817-201ENST00000615588 66 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.3□□□□□ -2.04
NPAS1Q99742 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
NPAS1Q99742 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NPAS1Q99742 AL136360.1-201ENST00000503377 1900 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNU6-961P-201ENST00000363893 105 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNU6-1264P-201ENST00000383891 107 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNU6-20P-201ENST00000384106 107 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNU6-975P-201ENST00000384296 105 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 SNORA67.2-201ENST00000384300 149 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 MIR144-201ENST00000384886 86 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 MIR634-201ENST00000385208 97 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 MRPL35P1-201ENST00000404272 572 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNU2-20P-201ENST00000410425 191 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNA5SP504-201ENST00000410676 117 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 RNA5SP270-201ENST00000411361 118 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.29□□□□□ -2.04
NPAS1Q99742 RAB28P5-201ENST00000427490 651 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.29□□□□□ -2.04
NPAS1Q99742 MTATP8P1-201ENST00000467115 207 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 MRPS35P2-201ENST00000508242 191 ntBASIC2.29□□□□□ -2.04
NPAS1Q99742 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms