Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC021231.3-201ENST00000558497 370 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.08□□□□□ -1.92
USP39Q53GS9 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.08□□□□□ -1.92
USP39Q53GS9 DEFB117-201ENST00000602356 141 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC107294.3-201ENST00000609211 526 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AL359198.2-201ENST00000611836 194 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC091895.1-201ENST00000624494 256 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 MIR3529-201ENST00000637713 78 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
USP39Q53GS9 AC092593.1-201ENST00000515413 1815 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
USP39Q53GS9 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.07□□□□□ -1.92
USP39Q53GS9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.07□□□□□ -1.92
USP39Q53GS9 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 AC092268.1-201ENST00000342691 405 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
USP39Q53GS9 SNORA72.2-201ENST00000365028 127 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 MIR569-201ENST00000385228 96 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.07□□□□□ -1.92
USP39Q53GS9 AC012306.1-201ENST00000423267 114 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 RPL37P4-201ENST00000448908 268 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 RPS27AP9-201ENST00000477681 438 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 RPS27AP10-201ENST00000496103 208 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 AC005840.1-201ENST00000498412 377 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 RNA5SP272-201ENST00000516095 111 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 RNU6-426P-201ENST00000516464 97 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 SNORA31.16-201ENST00000516773 139 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.07□□□□□ -1.92
USP39Q53GS9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.07□□□□□ -1.92
USP39Q53GS9 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.07□□□□□ -1.92
USP39Q53GS9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.07□□□□□ -1.92
USP39Q53GS9 AC138915.1-201ENST00000565427 1685 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 AC010680.1-201ENST00000590024 3590 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.07□□□□□ -1.92
USP39Q53GS9 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
USP39Q53GS9 AC100821.1-201ENST00000523153 2479 ntBASIC3.07□□□□□ -1.92
USP39Q53GS9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USP39Q53GS9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
USP39Q53GS9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USP39Q53GS9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
USP39Q53GS9 Y_RNA.179-201ENST00000363844 90 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 RNU6-622P-201ENST00000384272 103 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 RNU6-417P-201ENST00000384712 107 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
USP39Q53GS9 SNORD67-201ENST00000390833 111 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 MIR888-201ENST00000401186 77 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 AL139132.1-201ENST00000431587 344 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 AC091179.3-201ENST00000474761 144 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 SCGB1D5P-201ENST00000515134 247 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 RNU6-155P-201ENST00000516347 100 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 CYCSP23-201ENST00000519781 313 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 AC107016.2-201ENST00000547968 190 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 FAM35BP-202ENST00000497389 3337 ntBASIC3.06□□□□□ -1.92
USP39Q53GS9 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
USP39Q53GS9 AC022336.2-201ENST00000568966 2538 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP39Q53GS9 Y_RNA.121-201ENST00000363309 113 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 Y_RNA.498-201ENST00000384460 102 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 RNU6-851P-201ENST00000384565 107 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 RPL21P3-201ENST00000395517 478 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 RNU2-54P-201ENST00000410299 190 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 Y_RNA.629-201ENST00000411368 105 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 AC009963.1-201ENST00000417265 157 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 RPS12P18-201ENST00000442381 270 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.05□□□□□ -1.92
USP39Q53GS9 AC146507.2-201ENST00000460608 476 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 AC010409.1-201ENST00000487382 476 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 RPS29P20-201ENST00000489592 171 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.05□□□□□ -1.92
USP39Q53GS9 RNU6-581P-201ENST00000516214 105 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.05□□□□□ -1.92
USP39Q53GS9 AC009163.5-201ENST00000575421 637 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.05□□□□□ -1.92
USP39Q53GS9 AC068700.1-201ENST00000565862 3754 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 ADAM3A-203ENST00000461344 2157 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.05□□□□□ -1.92
USP39Q53GS9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
USP39Q53GS9 AL136360.1-201ENST00000503377 1900 ntBASIC3.05□□□□□ -1.92
USP39Q53GS9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.04□□□□□ -1.92
USP39Q53GS9 Y_RNA.182-201ENST00000363880 111 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 RNU4-17P-201ENST00000365598 141 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 SNORA46-201ENST00000384762 135 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AL512633.1-201ENST00000399931 655 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 RNA5SP184-201ENST00000411071 108 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 NDUFS5P4-201ENST00000412983 318 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AC105272.1-201ENST00000438604 198 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AL135938.1-201ENST00000443141 297 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 Z96811.1-201ENST00000445880 108 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 RPL39P29-201ENST00000447779 157 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.04□□□□□ -1.92
USP39Q53GS9 RNU7-121P-201ENST00000516604 62 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AC100767.1-201ENST00000528178 123 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AC013412.1-201ENST00000610687 192 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 Y_RNA.778-201ENST00000620203 90 ntBASIC3.04□□□□□ -1.92
USP39Q53GS9 AC002064.3-201ENST00000623448 346 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 447.8 ms