Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-677P-201ENST00000516914 101 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 LRRC6P1-201ENST00000532188 885 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 MIR3115-201ENST00000577915 68 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 MIR3165-201ENST00000579874 75 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AL391903.3-201ENST00000612158 163 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNU6-378P-201ENST00000384324 107 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNA5SP496-201ENST00000391240 109 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 BX664727.1-201ENST00000416024 466 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC002486.1-201ENST00000435098 391 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AL162725.1-201ENST00000435405 301 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 NFU1P2-201ENST00000448700 469 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNU6-64P-201ENST00000517119 105 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC069113.3-201ENST00000521019 150 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC026616.1-201ENST00000523157 525 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC068587.4-201ENST00000533893 186 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC090888.2-201ENST00000559765 1144 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 MIR4324-201ENST00000584846 72 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AC022217.4-201ENST00000604389 163 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AL136317.1-201ENST00000612653 226 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 AP000943.4-201ENST00000622912 357 ntBASIC-0.14□□□□□ -2.43
CHD9Q3L8U1 RNY4P28-201ENST00000365281 93 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 RNU6-1186P-201ENST00000410429 97 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 RNU2-62P-201ENST00000410868 191 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AL035398.1-201ENST00000430869 322 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 USP9YP28-201ENST00000435142 589 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 MTND1P4-201ENST00000435196 415 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 Z99289.3-201ENST00000605586 594 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC090186.1-201ENST00000605991 572 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC012409.4-201ENST00000612923 249 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AL662814.1-201ENST00000617364 121 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 RNU4-84P-201ENST00000364200 139 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 MIR610-201ENST00000385139 96 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 RNA5SP201-201ENST00000410316 124 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC022447.4-201ENST00000504053 364 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 HMGB1P28-201ENST00000507778 552 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 RNU6-150P-201ENST00000516237 95 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 RNU6-158P-201ENST00000517104 100 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 AL158042.1-201ENST00000605338 460 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 MIR6738-201ENST00000619620 64 ntBASIC-0.15□□□□□ -2.43
CHD9Q3L8U1 SNORA42.1-201ENST00000363515 137 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 SNORA1.1-201ENST00000364671 133 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.287-201ENST00000364853 94 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 SNORA12.1-201ENST00000390873 148 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 SNORA75.6-201ENST00000391318 127 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC090960.1-201ENST00000421072 306 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AL953862.1-201ENST00000423016 168 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 DEFB130D-201ENST00000426866 237 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC005002.2-201ENST00000438228 269 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU6-1037P-201ENST00000459571 107 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC091874.1-201ENST00000511402 339 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU6-917P-201ENST00000516294 104 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 ADI1P3-201ENST00000549509 470 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RPL23AP91-201ENST00000569211 455 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 MIR3612-201ENST00000579753 87 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC012467.1-201ENST00000607740 256 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU6-468P-201ENST00000384003 109 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU6-10P-201ENST00000384036 107 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU6V-201ENST00000384105 107 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU6-15P-201ENST00000384534 107 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNU2-59P-201ENST00000410482 191 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RPS29P15-201ENST00000458329 171 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC007547.1-201ENST00000462177 490 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RBBP4P6-201ENST00000508098 202 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC104383.1-201ENST00000530297 370 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AL596327.1-201ENST00000603629 213 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 AC104695.3-201ENST00000604052 296 ntBASIC-0.16□□□□□ -2.43
CHD9Q3L8U1 RNA5SP264-201ENST00000363115 107 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 RNU4-76P-201ENST00000364509 141 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 U8.5-201ENST00000364528 136 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 RNA5SP504-201ENST00000410676 117 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 HIGD1AP15-201ENST00000416198 280 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 ZNF736P7Y-201ENST00000425158 820 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 AC244670.1-201ENST00000436879 112 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 AC074290.1-201ENST00000448883 135 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 MTATP6P9-201ENST00000515039 680 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 RNU6-1069P-201ENST00000516612 133 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 RNU2-12P-201ENST00000517216 168 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 uc_338.16-201ENST00000621804 95 ntBASIC-0.16□□□□□ -2.44
CHD9Q3L8U1 RNU6-1285P-201ENST00000363480 105 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RNU6-1026P-201ENST00000384465 108 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RNA5SP109-201ENST00000391010 116 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms