Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RNA5SP401-201ENST00000515920 127 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 Y_RNA.676-201ENST00000516393 96 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 RNU6-835P-201ENST00000516974 104 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXF1Q12946 MRPS36P4-201ENST00000534436 298 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 OSBPL9P5-201ENST00000542581 171 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC025423.5-201ENST00000550230 219 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 CYP3A52P-201ENST00000563326 91 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXF1Q12946 FAM106DP-201ENST00000586416 501 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.72□□□□□ -2.29
FOXF1Q12946 Z99497.2-201ENST00000603634 310 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AL357078.3-201ENST00000607528 618 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC092807.2-201ENST00000609367 243 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC108706.1-201ENST00000611053 297 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 AC078883.4-201ENST00000623218 367 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 SCARNA4-201ENST00000629045 128 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 OR5AK4P-201ENST00000635912 903 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 MIR3974-201ENST00000637126 96 ntBASIC0.72□□□□□ -2.29
FOXF1Q12946 Y_RNA.123-201ENST00000363338 102 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 Y_RNA.191-201ENST00000363972 113 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 SNORD115-32-201ENST00000364079 82 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 MIR146A-201ENST00000385201 99 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 RNU6-325P-201ENST00000411132 105 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXF1Q12946 TIMM9P3-201ENST00000428659 274 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 MTCO2P16-201ENST00000436962 677 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXF1Q12946 MTCO1P19-201ENST00000443487 500 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AC073910.1-201ENST00000445047 438 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.71□□□□□ -2.3
FOXF1Q12946 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXF1Q12946 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.71□□□□□ -2.3
FOXF1Q12946 UBL5P1-201ENST00000507979 193 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 RNU6-1198P-201ENST00000516904 67 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AC104576.1-201ENST00000524225 88 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AL512310.8-201ENST00000550183 120 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AL158211.1-201ENST00000566763 763 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AC136932.1-201ENST00000574771 208 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AC245008.1-201ENST00000608123 476 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AL133215.3-201ENST00000609801 448 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.71□□□□□ -2.3
FOXF1Q12946 snoZ196.1-201ENST00000625269 89 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 AL391516.1-201ENST00000554380 2449 ntBASIC0.71□□□□□ -2.3
FOXF1Q12946 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
FOXF1Q12946 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
FOXF1Q12946 RNU1-124P-201ENST00000363861 145 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 RNU6-522P-201ENST00000364497 107 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 Y_RNA.287-201ENST00000364853 94 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 RNU4-66P-201ENST00000365199 138 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 SNORA4.2-201ENST00000365313 147 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 SNORA69-201ENST00000383895 132 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 MIR549A-201ENST00000385268 96 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 SNORD37.1-201ENST00000390968 65 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
FOXF1Q12946 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXF1Q12946 RNU7-57P-201ENST00000459540 60 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 RPL23AP75-201ENST00000491601 451 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 HMGN1P12-201ENST00000499125 195 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 AC010424.1-201ENST00000506336 297 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXF1Q12946 SNORD116-28-201ENST00000516123 91 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 RNA5SP404-201ENST00000517118 132 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 AC025647.1-201ENST00000517879 253 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.7□□□□□ -2.3
FOXF1Q12946 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
FOXF1Q12946 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXF1Q12946 AL442163.3-201ENST00000554110 156 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXF1Q12946 MZT1P2-201ENST00000604387 248 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 AL121757.2-201ENST00000611223 313 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 AL078596.1-201ENST00000624856 447 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 ELL2P3-201ENST00000457883 1602 ntBASIC0.7□□□□□ -2.3
FOXF1Q12946 SNORA33-201ENST00000363664 130 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 SNORD113-7-201ENST00000363762 77 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 Y_RNA.231-201ENST00000364358 102 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC016909.1-201ENST00000415916 166 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 MRPS10P2-201ENST00000431226 381 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC016717.1-201ENST00000448918 286 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC079354.2-201ENST00000453523 154 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 TPT1P7-201ENST00000458300 517 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 RPS29P1-201ENST00000465274 159 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 TRBVA-201ENST00000498804 316 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC010486.3-201ENST00000511602 785 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXF1Q12946 MTND1P35-201ENST00000526739 508 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC011604.1-201ENST00000545978 196 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.69□□□□□ -2.3
FOXF1Q12946 AC004584.2-201ENST00000570407 410 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 MIR3664-201ENST00000579074 99 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 MIR4452-201ENST00000583004 71 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 RMST_3.1-201ENST00000611651 109 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AL359075.3-201ENST00000613288 217 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC040896.1-201ENST00000613819 479 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC009033.1-201ENST00000624279 431 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 U6.108-201ENST00000637764 58 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 MIR6866-201ENST00000638146 69 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC068137.3-201ENST00000639191 341 ntBASIC0.69□□□□□ -2.3
FOXF1Q12946 AC018630.2-201ENST00000534866 2403 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms