Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC087441.2-201ENST00000529141 262 ntBASIC1.92□□□□□ -2.1
LIMK1P53667 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.92□□□□□ -2.1
LIMK1P53667 MIR3198-2-201ENST00000577868 80 ntBASIC1.92□□□□□ -2.1
LIMK1P53667 MIR4255-201ENST00000579351 72 ntBASIC1.92□□□□□ -2.1
LIMK1P53667 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.92□□□□□ -2.1
LIMK1P53667 AC018462.2-201ENST00000605375 395 ntBASIC1.92□□□□□ -2.1
LIMK1P53667 AC083806.3-201ENST00000614016 455 ntBASIC1.92□□□□□ -2.1
LIMK1P53667 DUXAP9-208ENST00000622815 614 ntBASIC1.92□□□□□ -2.1
LIMK1P53667 BX322639.1-202ENST00000423987 2213 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.91□□□□□ -2.1
LIMK1P53667 SNORD115-32-201ENST00000364079 82 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 RNU6-593P-201ENST00000364716 112 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 MIR7-2-201ENST00000384970 110 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 Y_RNA.594-201ENST00000410373 140 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 RNA5SP501-201ENST00000410990 112 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 AC114982.1-201ENST00000469402 321 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 RNU1-40P-201ENST00000516816 164 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 RNU1-97P-201ENST00000516872 164 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 Y_RNA.708-201ENST00000516950 96 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 RNU1-117P-201ENST00000517041 158 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 DNAJC19P9-201ENST00000555084 351 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMK1P53667 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMK1P53667 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.91□□□□□ -2.1
LIMK1P53667 uc_338.5-201ENST00000611839 155 ntBASIC1.91□□□□□ -2.1
LIMK1P53667 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIMK1P53667 Y_RNA.279-201ENST00000364763 95 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.9□□□□□ -2.11
LIMK1P53667 Y_RNA.405-201ENST00000383979 100 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 Y_RNA.451-201ENST00000384200 100 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 Y_RNA.482-201ENST00000384377 111 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 Y_RNA.524-201ENST00000384564 100 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 Y_RNA.561-201ENST00000384694 100 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 RNU1-131P-201ENST00000458943 161 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 RPL30P10-201ENST00000488148 337 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 AC103851.1-201ENST00000506833 274 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.9□□□□□ -2.11
LIMK1P53667 AC026782.1-201ENST00000512952 449 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 RNU6-948P-201ENST00000516374 107 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 Y_RNA.706-201ENST00000516933 99 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 SUMO2P18-201ENST00000518873 252 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 CBX3P8-201ENST00000532412 525 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 MIR3169-201ENST00000578032 83 ntBASIC1.9□□□□□ -2.11
LIMK1P53667 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.9□□□□□ -2.11
LIMK1P53667 RNU6-595P-201ENST00000363944 107 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 Y_RNA.224-201ENST00000364308 111 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 MIR934-201ENST00000401241 83 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AC009310.1-201ENST00000414414 451 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AC243428.1-201ENST00000421099 264 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AC112492.4-201ENST00000456549 352 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.89□□□□□ -2.11
LIMK1P53667 Y_RNA.670-201ENST00000516255 105 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 RNA5SP364-201ENST00000516938 78 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AC134698.4-201ENST00000523451 826 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.89□□□□□ -2.11
LIMK1P53667 AC005786.1-201ENST00000588553 154 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AC009229.3-201ENST00000608056 282 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 AC099654.5-201ENST00000636479 350 ntBASIC1.89□□□□□ -2.11
LIMK1P53667 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LIMK1P53667 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIMK1P53667 Y_RNA.184-201ENST00000363884 108 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 RNU6-280P-201ENST00000364145 104 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 Y_RNA.490-201ENST00000384413 102 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 RNU6-700P-201ENST00000391043 107 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 AL627390.1-201ENST00000396055 340 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 MTCO3P29-201ENST00000432119 779 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 AC098614.3-201ENST00000438957 440 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.88□□□□□ -2.11
LIMK1P53667 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.88□□□□□ -2.11
LIMK1P53667 AC010531.2-201ENST00000465012 153 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 RPL7P42-201ENST00000481005 679 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.88□□□□□ -2.11
LIMK1P53667 AC097473.1-201ENST00000508142 408 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 CBX3P4-201ENST00000538909 354 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 SNORA4-201ENST00000584302 138 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 AL078596.1-201ENST00000624856 447 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 AC099654.14-201ENST00000638599 341 ntBASIC1.88□□□□□ -2.11
LIMK1P53667 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
LIMK1P53667 Y_RNA.88-201ENST00000363029 99 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 RNU5F-3P-201ENST00000363767 117 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 Y_RNA.339-201ENST00000365325 102 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 RNU6-245P-201ENST00000384020 107 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 RNU6-17P-201ENST00000384245 107 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 RNU6-18P-201ENST00000384527 107 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 Y_RNA.540-201ENST00000384638 111 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 MIR1276-201ENST00000408707 83 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.87□□□□□ -2.11
LIMK1P53667 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.87□□□□□ -2.11
LIMK1P53667 HSPE1P21-201ENST00000438283 308 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.87□□□□□ -2.11
LIMK1P53667 MTCO1P44-201ENST00000441935 243 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 AC016717.1-201ENST00000448918 286 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.87□□□□□ -2.11
LIMK1P53667 MTND3P10-201ENST00000450967 341 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 RNU7-87P-201ENST00000459343 62 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 AC107393.1-201ENST00000512403 346 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 RNU6-250P-201ENST00000516958 103 ntBASIC1.87□□□□□ -2.11
LIMK1P53667 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.87□□□□□ -2.11
LIMK1P53667 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms