Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.17□□□□□ -2.22
RFX3P48380 AL353572.1-201ENST00000442490 417 ntBASIC1.17□□□□□ -2.22
RFX3P48380 AC073910.1-201ENST00000445047 438 ntBASIC1.17□□□□□ -2.22
RFX3P48380 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.17□□□□□ -2.22
RFX3P48380 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.17□□□□□ -2.22
RFX3P48380 AC016957.1-201ENST00000534895 309 ntBASIC1.17□□□□□ -2.22
RFX3P48380 AC019288.1-201ENST00000557918 224 ntBASIC1.17□□□□□ -2.22
RFX3P48380 MIR3937-201ENST00000580135 106 ntBASIC1.17□□□□□ -2.22
RFX3P48380 AC146944.4-201ENST00000602697 718 ntBASIC1.17□□□□□ -2.22
RFX3P48380 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.17□□□□□ -2.22
RFX3P48380 SCARNA4-201ENST00000629045 128 ntBASIC1.17□□□□□ -2.22
RFX3P48380 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.16□□□□□ -2.22
RFX3P48380 MTND5P35-201ENST00000557537 1720 ntBASIC1.16□□□□□ -2.22
RFX3P48380 snoU2-30.2-201ENST00000362805 70 ntBASIC1.16□□□□□ -2.22
RFX3P48380 SNORD115-8-201ENST00000363856 82 ntBASIC1.16□□□□□ -2.22
RFX3P48380 SNORD115-38-201ENST00000365037 82 ntBASIC1.16□□□□□ -2.22
RFX3P48380 SNORA4.2-201ENST00000365313 147 ntBASIC1.16□□□□□ -2.22
RFX3P48380 RNU6-245P-201ENST00000384020 107 ntBASIC1.16□□□□□ -2.22
RFX3P48380 RNU6-483P-201ENST00000384088 108 ntBASIC1.16□□□□□ -2.22
RFX3P48380 Y_RNA.530-201ENST00000384587 101 ntBASIC1.16□□□□□ -2.22
RFX3P48380 SNORA40.6-201ENST00000391153 128 ntBASIC1.16□□□□□ -2.22
RFX3P48380 ZNF885P-201ENST00000420174 1098 ntBASIC1.16□□□□□ -2.22
RFX3P48380 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.16□□□□□ -2.22
RFX3P48380 RPL30P7-201ENST00000479312 323 ntBASIC1.16□□□□□ -2.22
RFX3P48380 RN7SKP179-201ENST00000516126 217 ntBASIC1.16□□□□□ -2.22
RFX3P48380 Y_RNA.665-201ENST00000516177 98 ntBASIC1.16□□□□□ -2.22
RFX3P48380 AC024995.1-201ENST00000523014 93 ntBASIC1.16□□□□□ -2.22
RFX3P48380 AC010525.2-201ENST00000590920 195 ntBASIC1.16□□□□□ -2.22
RFX3P48380 MIR8070-201ENST00000616510 88 ntBASIC1.16□□□□□ -2.22
RFX3P48380 AL353770.2-201ENST00000620024 78 ntBASIC1.16□□□□□ -2.22
RFX3P48380 AC008873.1-201ENST00000625051 138 ntBASIC1.16□□□□□ -2.22
RFX3P48380 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.16□□□□□ -2.22
RFX3P48380 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
RFX3P48380 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
RFX3P48380 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
RFX3P48380 SNORD115-32-201ENST00000364079 82 ntBASIC1.15□□□□□ -2.23
RFX3P48380 Y_RNA.373-201ENST00000365600 103 ntBASIC1.15□□□□□ -2.23
RFX3P48380 RNU6-790P-201ENST00000384479 105 ntBASIC1.15□□□□□ -2.23
RFX3P48380 RNU6-939P-201ENST00000384634 107 ntBASIC1.15□□□□□ -2.23
RFX3P48380 Y_RNA.559-201ENST00000384686 107 ntBASIC1.15□□□□□ -2.23
RFX3P48380 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
RFX3P48380 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
RFX3P48380 DAP3P1-201ENST00000441522 278 ntBASIC1.15□□□□□ -2.23
RFX3P48380 PCMTD1P1-201ENST00000455560 355 ntBASIC1.15□□□□□ -2.23
RFX3P48380 snoU13.27-201ENST00000459278 104 ntBASIC1.15□□□□□ -2.23
RFX3P48380 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.15□□□□□ -2.23
RFX3P48380 Y_RNA.673-201ENST00000516306 88 ntBASIC1.15□□□□□ -2.23
RFX3P48380 AC090821.2-201ENST00000523552 176 ntBASIC1.15□□□□□ -2.23
RFX3P48380 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.15□□□□□ -2.23
RFX3P48380 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.15□□□□□ -2.23
RFX3P48380 CYP3A52P-201ENST00000563326 91 ntBASIC1.15□□□□□ -2.23
RFX3P48380 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.15□□□□□ -2.23
RFX3P48380 AC048344.4-201ENST00000619744 527 ntBASIC1.15□□□□□ -2.23
RFX3P48380 MIR1321-201ENST00000637766 79 ntBASIC1.15□□□□□ -2.23
RFX3P48380 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
RFX3P48380 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.15□□□□□ -2.23
RFX3P48380 Y_RNA.100-201ENST00000363141 102 ntBASIC1.14□□□□□ -2.23
RFX3P48380 SNORA33-201ENST00000363664 130 ntBASIC1.14□□□□□ -2.23
RFX3P48380 RNU6-137P-201ENST00000363680 108 ntBASIC1.14□□□□□ -2.23
RFX3P48380 RNY3P3-201ENST00000363816 102 ntBASIC1.14□□□□□ -2.23
RFX3P48380 Y_RNA.194-201ENST00000363985 102 ntBASIC1.14□□□□□ -2.23
RFX3P48380 RNU6-1305P-201ENST00000364353 104 ntBASIC1.14□□□□□ -2.23
RFX3P48380 RNU4-9P-201ENST00000364951 139 ntBASIC1.14□□□□□ -2.23
RFX3P48380 AC004866.1-201ENST00000411748 78 ntBASIC1.14□□□□□ -2.23
RFX3P48380 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.14□□□□□ -2.23
RFX3P48380 AC008134.1-201ENST00000420943 193 ntBASIC1.14□□□□□ -2.23
RFX3P48380 EIF1P1-201ENST00000421436 341 ntBASIC1.14□□□□□ -2.23
RFX3P48380 AC016717.1-201ENST00000448918 286 ntBASIC1.14□□□□□ -2.23
RFX3P48380 RNU7-187P-201ENST00000458985 68 ntBASIC1.14□□□□□ -2.23
RFX3P48380 HMGN2P26-201ENST00000463169 339 ntBASIC1.14□□□□□ -2.23
RFX3P48380 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.14□□□□□ -2.23
RFX3P48380 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.14□□□□□ -2.23
RFX3P48380 ZNF519P2-201ENST00000557032 169 ntBASIC1.14□□□□□ -2.23
RFX3P48380 MIR6078-201ENST00000611069 100 ntBASIC1.14□□□□□ -2.23
RFX3P48380 AL078596.1-201ENST00000624856 447 ntBASIC1.14□□□□□ -2.23
RFX3P48380 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
RFX3P48380 ZNF204P-201ENST00000416749 2397 ntBASIC1.13□□□□□ -2.23
RFX3P48380 SNORD50.1-201ENST00000362987 71 ntBASIC1.13□□□□□ -2.23
RFX3P48380 Y_RNA.256-201ENST00000364594 104 ntBASIC1.13□□□□□ -2.23
RFX3P48380 RNU6-534P-201ENST00000364877 106 ntBASIC1.13□□□□□ -2.23
RFX3P48380 SNORA67.2-201ENST00000384300 149 ntBASIC1.13□□□□□ -2.23
RFX3P48380 MIR549A-201ENST00000385268 96 ntBASIC1.13□□□□□ -2.23
RFX3P48380 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
RFX3P48380 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.13□□□□□ -2.23
RFX3P48380 COX6CP10-201ENST00000416832 224 ntBASIC1.13□□□□□ -2.23
RFX3P48380 TOMM22P2-201ENST00000430735 237 ntBASIC1.13□□□□□ -2.23
RFX3P48380 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.13□□□□□ -2.23
RFX3P48380 AC079354.2-201ENST00000453523 154 ntBASIC1.13□□□□□ -2.23
RFX3P48380 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.13□□□□□ -2.23
RFX3P48380 RNU7-57P-201ENST00000459540 60 ntBASIC1.13□□□□□ -2.23
RFX3P48380 RPL31P58-201ENST00000469001 379 ntBASIC1.13□□□□□ -2.23
RFX3P48380 AL133373.1-201ENST00000497098 94 ntBASIC1.13□□□□□ -2.23
RFX3P48380 MTCO2P30-201ENST00000503662 364 ntBASIC1.13□□□□□ -2.23
RFX3P48380 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.13□□□□□ -2.23
RFX3P48380 POLR3GP2-201ENST00000588366 668 ntBASIC1.13□□□□□ -2.23
RFX3P48380 SNORD11B-201ENST00000607707 90 ntBASIC1.13□□□□□ -2.23
RFX3P48380 AC092954.2-201ENST00000609103 430 ntBASIC1.13□□□□□ -2.23
RFX3P48380 AC009033.1-201ENST00000624279 431 ntBASIC1.13□□□□□ -2.23
RFX3P48380 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.13□□□□□ -2.23
RFX3P48380 snoZ196.1-201ENST00000625269 89 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms