Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC074133.1-201ENST00000515696 183 ntBASIC2.31□□□□□ -2.04
PTPN9P43378 MIR449C-201ENST00000516047 92 ntBASIC2.31□□□□□ -2.04
PTPN9P43378 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.31□□□□□ -2.04
PTPN9P43378 HSBP1P1-201ENST00000555205 166 ntBASIC2.31□□□□□ -2.04
PTPN9P43378 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.31□□□□□ -2.04
PTPN9P43378 AC068205.3-201ENST00000636385 468 ntBASIC2.31□□□□□ -2.04
PTPN9P43378 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
PTPN9P43378 MTND5P35-201ENST00000557537 1720 ntBASIC2.31□□□□□ -2.04
PTPN9P43378 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
PTPN9P43378 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PTPN9P43378 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.3□□□□□ -2.04
PTPN9P43378 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PTPN9P43378 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
PTPN9P43378 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PTPN9P43378 Y_RNA.132-201ENST00000363421 102 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 Y_RNA.332-201ENST00000365271 113 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 SNORA63.7-201ENST00000365579 123 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 SNORA6-201ENST00000384033 151 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 RNU6-639P-201ENST00000384074 107 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 RNU6-1026P-201ENST00000384465 108 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 RNU1-148P-201ENST00000384472 162 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 SNORD78.2-201ENST00000391076 69 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 MRPL35P1-201ENST00000404272 572 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 MIR1283-1-201ENST00000408494 87 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 Y_RNA.595-201ENST00000410403 105 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 RN7SKP284-201ENST00000411002 343 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 EDDM3CP-201ENST00000415977 425 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 SDAD1P3-201ENST00000427380 333 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 AC096644.2-201ENST00000429278 159 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 HMGN2P18-201ENST00000450680 270 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 AL137159.1-201ENST00000452808 512 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 AC093259.1-201ENST00000509755 300 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.3□□□□□ -2.04
PTPN9P43378 RNU6-1012P-201ENST00000516606 109 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 RNA5SP490-201ENST00000517141 136 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.3□□□□□ -2.04
PTPN9P43378 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.3□□□□□ -2.04
PTPN9P43378 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.3□□□□□ -2.04
PTPN9P43378 AC022432.1-201ENST00000595739 310 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 ZNF720P1-201ENST00000562403 1939 ntBASIC2.3□□□□□ -2.04
PTPN9P43378 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
PTPN9P43378 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PTPN9P43378 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PTPN9P43378 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
PTPN9P43378 RNA5SP361-201ENST00000362686 118 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 RNU4-50P-201ENST00000364361 141 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 SNORD14.1-201ENST00000365609 90 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 Y_RNA.645-201ENST00000391229 102 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC010095.1-201ENST00000443543 144 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 PRELID3BP1-201ENST00000457142 540 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC114982.1-201ENST00000469402 321 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC104435.1-201ENST00000483483 166 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.29□□□□□ -2.04
PTPN9P43378 RRN3P3-201ENST00000549207 578 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 ANP32BP3-201ENST00000559213 706 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC233702.2-202ENST00000562547 291 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC006504.6-201ENST00000590142 199 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 RPS29P30-201ENST00000600975 111 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 MZT1P2-201ENST00000604387 248 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC010205.1-201ENST00000616668 449 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 AC007742.2-201ENST00000618226 398 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 MIR6132-201ENST00000622083 109 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
PTPN9P43378 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.29□□□□□ -2.04
PTPN9P43378 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
PTPN9P43378 AC091812.1-201ENST00000432235 1948 ntBASIC2.29□□□□□ -2.04
PTPN9P43378 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
PTPN9P43378 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.04
PTPN9P43378 MIRLET7G-201ENST00000362280 84 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 Y_RNA.99-201ENST00000363138 105 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 Y_RNA.424-201ENST00000384063 103 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 RNU1-52P-201ENST00000384190 164 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 SNORD12B-201ENST00000410433 91 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 RNA5SP504-201ENST00000410676 117 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AL356320.1-201ENST00000429616 163 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AL445305.1-201ENST00000432577 575 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.28□□□□□ -2.04
PTPN9P43378 FCF1P4-201ENST00000448326 183 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AC074290.1-201ENST00000448883 135 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.28□□□□□ -2.04
PTPN9P43378 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.28□□□□□ -2.04
PTPN9P43378 PCNPP5-201ENST00000452246 481 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 RNU2-34P-201ENST00000516534 121 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 SCARNA16.3-201ENST00000516595 184 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 RNA5SP137-201ENST00000516833 135 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AC087441.2-201ENST00000529141 262 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AC040926.1-201ENST00000530195 238 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AC026271.5-201ENST00000577873 130 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 MIR4680-201ENST00000580906 66 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 MIR4753-201ENST00000585119 83 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AL121655.1-201ENST00000605811 308 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 AL590808.1-201ENST00000618696 141 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.28□□□□□ -2.04
PTPN9P43378 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
PTPN9P43378 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PTPN9P43378 MIR410-201ENST00000362222 80 ntBASIC2.27□□□□□ -2.05
PTPN9P43378 U3.8-201ENST00000363675 217 ntBASIC2.27□□□□□ -2.05
PTPN9P43378 RNU6-438P-201ENST00000365561 103 ntBASIC2.27□□□□□ -2.05
PTPN9P43378 Y_RNA.380-201ENST00000365663 111 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms