Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 RN7SKP223-201ENST00000410582 62 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 AC012306.1-201ENST00000423267 114 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.02□□□□□ -2.09
HNF4AP41235 MTCYBP10-201ENST00000424905 650 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 AC096644.2-201ENST00000429278 159 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.02□□□□□ -2.09
HNF4AP41235 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.02□□□□□ -2.09
HNF4AP41235 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.02□□□□□ -2.09
HNF4AP41235 RNU4-77P-201ENST00000516692 156 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.02□□□□□ -2.09
HNF4AP41235 AL442663.2-201ENST00000554385 511 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 AC040896.1-201ENST00000613819 479 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 AC138305.3-201ENST00000624988 240 ntBASIC2.02□□□□□ -2.09
HNF4AP41235 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.02□□□□□ -2.09
HNF4AP41235 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.01□□□□□ -2.09
HNF4AP41235 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
HNF4AP41235 Y_RNA.202-201ENST00000364083 110 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 SNORD32B-201ENST00000364460 84 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 SNORA33.2-201ENST00000365413 134 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 RNU6-17P-201ENST00000384245 107 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 RNU6-18P-201ENST00000384527 107 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 MIR190B-201ENST00000401119 79 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 AL590004.1-201ENST00000405321 300 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 RNA5SP338-201ENST00000410495 85 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 DPH3P2-201ENST00000422618 250 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.01□□□□□ -2.09
HNF4AP41235 AC099799.1-201ENST00000439809 192 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 AC096638.1-201ENST00000444678 216 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.01□□□□□ -2.09
HNF4AP41235 RNU7-169P-201ENST00000459456 61 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 RNA5SP364-201ENST00000516938 78 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 RNU6-1137P-201ENST00000517073 99 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 MIR1273D-201ENST00000577266 86 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 MIR4448-201ENST00000584360 86 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 AC016925.2-201ENST00000605108 242 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 SNORD58B-201ENST00000607313 66 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.01□□□□□ -2.09
HNF4AP41235 AC130454.1-201ENST00000622948 401 ntBASIC2.01□□□□□ -2.09
HNF4AP41235 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
HNF4AP41235 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
HNF4AP41235 Y_RNA.106-201ENST00000363189 100 ntBASIC2□□□□□ -2.09
HNF4AP41235 RNU6-23P-201ENST00000363283 107 ntBASIC2□□□□□ -2.09
HNF4AP41235 RNU6-378P-201ENST00000384324 107 ntBASIC2□□□□□ -2.09
HNF4AP41235 MTCYBP2-201ENST00000407745 171 ntBASIC2□□□□□ -2.09
HNF4AP41235 RNA5SP489-201ENST00000410986 109 ntBASIC2□□□□□ -2.09
HNF4AP41235 RNA5SP501-201ENST00000410990 112 ntBASIC2□□□□□ -2.09
HNF4AP41235 AC007098.1-201ENST00000420122 367 ntBASIC2□□□□□ -2.09
HNF4AP41235 CEP57L1P1-201ENST00000430943 1201 ntBASIC2□□□□□ -2.09
HNF4AP41235 AL021397.1-201ENST00000451806 248 ntBASIC2□□□□□ -2.09
HNF4AP41235 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2□□□□□ -2.09
HNF4AP41235 U8.22-201ENST00000459141 133 ntBASIC2□□□□□ -2.09
HNF4AP41235 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2□□□□□ -2.09
HNF4AP41235 RNU6-988P-201ENST00000519081 107 ntBASIC2□□□□□ -2.09
HNF4AP41235 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2□□□□□ -2.09
HNF4AP41235 AC022254.1-201ENST00000567857 235 ntBASIC2□□□□□ -2.09
HNF4AP41235 7SK.7-201ENST00000603504 247 ntBASIC2□□□□□ -2.09
HNF4AP41235 RMST_6.1-201ENST00000611980 203 ntBASIC2□□□□□ -2.09
HNF4AP41235 Y_RNA.783-201ENST00000613546 102 ntBASIC2□□□□□ -2.09
HNF4AP41235 AC083806.3-201ENST00000614016 455 ntBASIC2□□□□□ -2.09
HNF4AP41235 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2□□□□□ -2.09
HNF4AP41235 AC091812.1-201ENST00000432235 1948 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 SNORD115-32-201ENST00000364079 82 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 RNU4-42P-201ENST00000364738 142 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 RNU1-115P-201ENST00000365329 160 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 Y_RNA.358-201ENST00000365491 99 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 MIR625-201ENST00000385047 85 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 MIR549A-201ENST00000385268 96 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 Y_RNA.645-201ENST00000391229 102 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.99□□□□□ -2.09
HNF4AP41235 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HNF4AP41235 AC027124.2-201ENST00000428249 105 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 AL118496.2-201ENST00000448300 230 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 OR2AQ1P-201ENST00000451972 200 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.99□□□□□ -2.09
HNF4AP41235 SNORA25.10-201ENST00000515926 124 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 RNA5SP490-201ENST00000517141 136 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 CYP4A27P-201ENST00000567218 190 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.99□□□□□ -2.09
HNF4AP41235 MIR3923-201ENST00000579521 83 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 AC100812.1-201ENST00000607622 580 ntBASIC1.99□□□□□ -2.09
HNF4AP41235 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.99□□□□□ -2.09
HNF4AP41235 RNU6-222P-201ENST00000362438 107 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 Y_RNA.364-201ENST00000365532 101 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 Y_RNA.557-201ENST00000384680 107 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 RNA5SP201-201ENST00000410316 124 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.98□□□□□ -2.09
HNF4AP41235 RPL23AP7-203ENST00000449021 469 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 RNU7-87P-201ENST00000459343 62 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 HMGB3P17-201ENST00000504195 649 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 Y_RNA.706-201ENST00000516933 99 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 RNU7-4P-201ENST00000516961 62 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.98□□□□□ -2.09
HNF4AP41235 AC027288.2-201ENST00000553028 243 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 AC104695.3-201ENST00000604052 296 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 PCGEM1.1-201ENST00000613431 131 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 AC005520.5-201ENST00000613926 164 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 uc_338.20-201ENST00000621563 178 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 AL606534.2-204ENST00000635008 178 ntBASIC1.98□□□□□ -2.09
HNF4AP41235 MIR4272-201ENST00000635924 64 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms