Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AL137792.2-201ENST00000443484 235 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 MTCO3P8-201ENST00000453691 755 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 SNORA25.14-201ENST00000516481 132 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 RNU6-1098P-201ENST00000516772 96 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 Y_RNA.701-201ENST00000516812 110 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 RNU6-548P-201ENST00000517083 115 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.26□□□□□ -2.05
SHMT1P34896 AC005296.1-201ENST00000616145 209 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 AC087588.2-201ENST00000617667 426 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 AC091925.1-201ENST00000623204 462 ntBASIC2.26□□□□□ -2.05
SHMT1P34896 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.26□□□□□ -2.05
SHMT1P34896 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SHMT1P34896 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SHMT1P34896 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
SHMT1P34896 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.26□□□□□ -2.05
SHMT1P34896 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SHMT1P34896 RNU6-222P-201ENST00000362438 107 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 RNU6-873P-201ENST00000363833 107 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 RNU1-115P-201ENST00000365329 160 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 Y_RNA.445-201ENST00000384168 102 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 MIR549A-201ENST00000385268 96 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 RNU2-20P-201ENST00000410425 191 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 AC009237.7-201ENST00000447357 229 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 RNU7-14P-201ENST00000459331 62 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 AC025033.1-201ENST00000463883 194 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.25□□□□□ -2.05
SHMT1P34896 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.25□□□□□ -2.05
SHMT1P34896 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.25□□□□□ -2.05
SHMT1P34896 ANP32BP3-201ENST00000559213 706 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.25□□□□□ -2.05
SHMT1P34896 UBL5P4-201ENST00000562584 236 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.25□□□□□ -2.05
SHMT1P34896 AC134503.1-201ENST00000633048 54 ntBASIC2.25□□□□□ -2.05
SHMT1P34896 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
SHMT1P34896 RNU1-62P-201ENST00000362599 164 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 RNU6-281P-201ENST00000384212 103 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 RNA5SP213-201ENST00000391031 106 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 Y_RNA.592-201ENST00000410274 109 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 AL445685.2-201ENST00000422551 342 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 EIF1P2-201ENST00000428233 350 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 AL603825.1-201ENST00000438481 80 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.24□□□□□ -2.05
SHMT1P34896 HMGN2P18-201ENST00000450680 270 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 Y_RNA.631-201ENST00000459607 101 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.24□□□□□ -2.05
SHMT1P34896 DEFB131C-201ENST00000528817 165 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 MIR5695-201ENST00000579717 85 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 AC044792.1-201ENST00000593294 196 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 SNRPGP17-201ENST00000603780 214 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 AL353997.5-201ENST00000618886 171 ntBASIC2.24□□□□□ -2.05
SHMT1P34896 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.24□□□□□ -2.05
SHMT1P34896 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
SHMT1P34896 AL596028.1-201ENST00000326971 197 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 Y_RNA.39-201ENST00000362620 98 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNU6-743P-201ENST00000364151 106 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNU6-438P-201ENST00000365561 103 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 Y_RNA.394-201ENST00000383942 103 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 SNORA51.11-201ENST00000384442 131 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNU6-1026P-201ENST00000384465 108 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNU1-148P-201ENST00000384472 162 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 MIR9-3-201ENST00000385084 90 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 SRIP3-201ENST00000413200 219 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RPS29P11-201ENST00000496507 171 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RPL23AP63-201ENST00000498752 471 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 SNORA4.4-201ENST00000515921 135 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNU6-911P-201ENST00000516523 104 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNU6-344P-201ENST00000516635 111 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 RNA5SP490-201ENST00000517141 136 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.23□□□□□ -2.05
SHMT1P34896 MIR3126-201ENST00000577443 74 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 AC026271.5-201ENST00000577873 130 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 AC092447.9-201ENST00000603395 144 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 AL138825.1-201ENST00000618587 192 ntBASIC2.23□□□□□ -2.05
SHMT1P34896 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.23□□□□□ -2.05
SHMT1P34896 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
SHMT1P34896 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
SHMT1P34896 Y_RNA.179-201ENST00000363844 90 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 RNU4-42P-201ENST00000364738 142 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 SNORD31B-201ENST00000364977 69 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 RNU6-793P-201ENST00000384233 104 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 RNU6-474P-201ENST00000384243 107 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 Y_RNA.496-201ENST00000384444 101 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 MIR300-201ENST00000401138 83 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 HMGN2P38-201ENST00000423806 265 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 AL445305.1-201ENST00000432577 575 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 RNU7-169P-201ENST00000459456 61 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 AC022868.1-201ENST00000517767 391 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 AC093023.1-201ENST00000547375 507 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 AC002984.1-201ENST00000591692 448 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 AC010999.1-201ENST00000611856 324 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
SHMT1P34896 AC009487.4-201ENST00000624969 3585 ntBASIC2.22□□□□□ -2.05
SHMT1P34896 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
SHMT1P34896 ZNF72P-201ENST00000425869 1908 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SHMT1P34896 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
SHMT1P34896 Y_RNA.138-201ENST00000363462 102 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 RNU6-879P-201ENST00000364328 108 ntBASIC2.21□□□□□ -2.06
SHMT1P34896 MIR1302-11-201ENST00000408051 138 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 163.2 ms