Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
COL8A1P27658 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.58□□□□□ -1.84
COL8A1P27658 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL8A1P27658 AL592437.2-201ENST00000421655 2434 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 RNU6-888P-201ENST00000363010 101 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 RNU6-486P-201ENST00000363116 107 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 SNORD61-201ENST00000384252 73 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 Y_RNA.500-201ENST00000384466 111 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 RNA5SP246-201ENST00000458909 119 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 RNU7-57P-201ENST00000459540 60 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.58□□□□□ -1.84
COL8A1P27658 AC006435.5-201ENST00000624486 112 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 MIR3199-2-201ENST00000636243 86 ntBASIC3.58□□□□□ -1.84
COL8A1P27658 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
COL8A1P27658 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL8A1P27658 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL8A1P27658 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL8A1P27658 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL8A1P27658 AC007496.3-201ENST00000624987 3443 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RNU6-1099P-201ENST00000363533 107 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RNU1-133P-201ENST00000364867 167 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.57□□□□□ -1.84
COL8A1P27658 RNU6-816P-201ENST00000390914 107 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RNU6-1268P-201ENST00000391214 107 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RNU6-1239P-201ENST00000391310 107 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 AC115115.1-201ENST00000449927 248 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RNU6-221P-201ENST00000459541 99 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 FAM35BP-202ENST00000497389 3337 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.57□□□□□ -1.84
COL8A1P27658 MIR3163-201ENST00000581592 73 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 JPX_2.1-201ENST00000614161 69 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 MIR7151-201ENST00000617477 60 ntBASIC3.57□□□□□ -1.84
COL8A1P27658 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.57□□□□□ -1.84
COL8A1P27658 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL8A1P27658 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL8A1P27658 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.57□□□□□ -1.84
COL8A1P27658 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL8A1P27658 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.56□□□□□ -1.84
COL8A1P27658 AL161912.2-201ENST00000565707 3007 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.56□□□□□ -1.84
COL8A1P27658 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.56□□□□□ -1.84
COL8A1P27658 Y_RNA.298-201ENST00000364960 107 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 RNU6-690P-201ENST00000365242 106 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 SNORD116-22-201ENST00000384430 92 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 RNU6-748P-201ENST00000384648 107 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 SNORD77.3-201ENST00000391113 65 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 RNU6-644P-201ENST00000391155 98 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 AL035423.1-201ENST00000420331 213 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.56□□□□□ -1.84
COL8A1P27658 RBMY2UP-201ENST00000453474 324 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 UBE2DNL-203ENST00000474922 222 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 RNU6-1270P-201ENST00000517128 108 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 AC027419.1-201ENST00000522976 328 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 AC100770.1-201ENST00000532310 322 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.56□□□□□ -1.84
COL8A1P27658 CYCSP30-201ENST00000546447 172 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.56□□□□□ -1.84
COL8A1P27658 AC091178.1-203ENST00000584586 279 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 AC021443.1-201ENST00000604478 211 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 MIR6868-201ENST00000611215 58 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 U6.73-201ENST00000619194 103 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL8A1P27658 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.56□□□□□ -1.84
COL8A1P27658 Z82217.1-201ENST00000625157 8149 ntBASIC3.56□□□□□ -1.84
COL8A1P27658 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL8A1P27658 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL8A1P27658 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL8A1P27658 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL8A1P27658 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.55□□□□□ -1.84
COL8A1P27658 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.55□□□□□ -1.84
COL8A1P27658 RNU6-1210P-201ENST00000363775 107 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 AL133475.1-201ENST00000404414 305 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 RNU6-402P-201ENST00000410678 103 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 AC004941.2-201ENST00000427009 228 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 AC006011.1-201ENST00000442758 349 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 RPS4XP11-201ENST00000446897 772 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 RN7SL807P-201ENST00000470923 297 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 RNU6-162P-201ENST00000516228 103 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 SUMO2P16-201ENST00000519475 264 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.55□□□□□ -1.84
COL8A1P27658 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
COL8A1P27658 AC000403.1-201ENST00000613696 3585 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL8A1P27658 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.55□□□□□ -1.84
COL8A1P27658 AC007656.2-201ENST00000624902 4547 ntBASIC3.55□□□□□ -1.84
COL8A1P27658 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
COL8A1P27658 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
COL8A1P27658 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL8A1P27658 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL8A1P27658 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL8A1P27658 SNORD115-13-201ENST00000363358 82 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 SNORD115-16-201ENST00000363887 82 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 SNORD115-1-201ENST00000364961 82 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 Y_RNA.426-201ENST00000384068 113 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 SNORD14D-201ENST00000384390 87 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 MIR300-201ENST00000401138 83 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 MIR1283-1-201ENST00000408494 87 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 RNU6-938P-201ENST00000411285 103 ntBASIC3.54□□□□□ -1.84
COL8A1P27658 AC069285.2-201ENST00000440210 275 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms