Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RNU7-34P-201ENST00000459394 64 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 RNU6-1037P-201ENST00000459571 107 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 RPS26P45-201ENST00000471748 340 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.93□□□□□ -2.26
NPHP4O75161 MTND4P7-201ENST00000523876 130 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.93□□□□□ -2.26
NPHP4O75161 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.93□□□□□ -2.26
NPHP4O75161 AL512310.8-201ENST00000550183 120 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 MIR4709-201ENST00000577272 72 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 MIR4528-201ENST00000577763 90 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 MIR4742-201ENST00000581069 85 ntBASIC0.93□□□□□ -2.26
NPHP4O75161 RNU6-222P-201ENST00000362438 107 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 RNU6-227P-201ENST00000362865 103 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 Y_RNA.123-201ENST00000363338 102 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 RNA5SP259-201ENST00000365541 109 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 RNU6-1106P-201ENST00000390845 107 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 AL606923.1-201ENST00000406616 190 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 RNA5SP511-201ENST00000410487 115 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 RNA5SP494-201ENST00000410653 129 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 SNX2P2-201ENST00000424553 323 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC0.92□□□□□ -2.26
NPHP4O75161 AC010154.1-201ENST00000425857 269 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.92□□□□□ -2.26
NPHP4O75161 HMGN2P34-201ENST00000437647 269 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.92□□□□□ -2.26
NPHP4O75161 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.92□□□□□ -2.26
NPHP4O75161 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.92□□□□□ -2.26
NPHP4O75161 SNORA14.1-201ENST00000516113 141 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 SUMO2P16-201ENST00000519475 264 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 AP000907.4-201ENST00000604143 237 ntBASIC0.92□□□□□ -2.26
NPHP4O75161 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.92□□□□□ -2.26
NPHP4O75161 SNORD33-201ENST00000362761 85 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 snoU2-30.2-201ENST00000362805 70 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 RNU5B-2P-201ENST00000363036 113 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 Y_RNA.287-201ENST00000364853 94 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AL663109.1-201ENST00000411498 844 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AL353193.1-201ENST00000421444 268 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.91□□□□□ -2.26
NPHP4O75161 AL606517.2-201ENST00000442855 241 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.91□□□□□ -2.26
NPHP4O75161 HMGN1P12-201ENST00000499125 195 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.91□□□□□ -2.26
NPHP4O75161 RNU6-948P-201ENST00000516374 107 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 RNU7-40P-201ENST00000516397 64 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.91□□□□□ -2.26
NPHP4O75161 CENPUP1-201ENST00000526649 1202 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 LRRC34P1-201ENST00000542742 915 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AC025423.5-201ENST00000550230 219 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 TPRKBP2-201ENST00000565969 475 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 MIR3941-201ENST00000582572 103 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 MIR4760-201ENST00000585040 80 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AC068790.2-201ENST00000602601 557 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AL929325.1-201ENST00000603096 117 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AL353149.1-201ENST00000610667 244 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 AC009509.4-201ENST00000619202 509 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 MIR8065-201ENST00000620577 100 ntBASIC0.91□□□□□ -2.26
NPHP4O75161 MTND4P12-201ENST00000498999 1377 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU6-1305P-201ENST00000364353 104 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU6-975P-201ENST00000384296 105 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU5A-2P-201ENST00000384337 116 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU6-1065P-201ENST00000384513 106 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU6-35P-201ENST00000384530 107 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU6-1158P-201ENST00000391167 107 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 AC069257.2-201ENST00000441819 155 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 USP9YP29-201ENST00000445112 563 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 NFU1P2-201ENST00000448700 469 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.9□□□□□ -2.26
NPHP4O75161 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.9□□□□□ -2.26
NPHP4O75161 AL163195.1-201ENST00000496941 348 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RN7SKP88-201ENST00000516847 250 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 MTCO2P4-201ENST00000517968 247 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.9□□□□□ -2.26
NPHP4O75161 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.9□□□□□ -2.26
NPHP4O75161 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.9□□□□□ -2.26
NPHP4O75161 AC004223.2-201ENST00000590309 544 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 AL121757.2-201ENST00000611223 313 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 7SK.8-201ENST00000612110 250 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 AC040896.1-201ENST00000613819 479 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 TCL6_2.1-201ENST00000615162 119 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 7SK.11-201ENST00000615477 250 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 7SK.13-201ENST00000622040 250 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 AC068647.2-201ENST00000637380 353 ntBASIC0.9□□□□□ -2.26
NPHP4O75161 RNU6-57P-201ENST00000411348 103 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.89□□□□□ -2.27
NPHP4O75161 TIMM9P3-201ENST00000428659 274 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 TPTE2P5-203ENST00000458118 728 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 MTCO3P38-201ENST00000468910 766 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 AF186996.7-201ENST00000492781 209 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 AL118558.2-201ENST00000556294 238 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 AC097065.2-201ENST00000608159 533 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.89□□□□□ -2.27
NPHP4O75161 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
NPHP4O75161 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
NPHP4O75161 MIR450B-201ENST00000401182 78 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 RPL37P10-201ENST00000412884 288 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 MTND2P9-201ENST00000422293 931 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.89□□□□□ -2.27
NPHP4O75161 RPS20P10-201ENST00000451209 253 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
NPHP4O75161 RNA5SP404-201ENST00000517118 132 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms