Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU1-41P-201ENST00000516161 162 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 RNU1-48P-201ENST00000516400 162 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 SNORD53-201ENST00000579969 78 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.58□□□□□ -2
VPS4AQ9UN37 AC010999.1-201ENST00000611856 324 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 TCL6_2.1-201ENST00000615162 119 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 AC240442.1-201ENST00000616055 283 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS4AQ9UN37 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
VPS4AQ9UN37 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.58□□□□□ -2
VPS4AQ9UN37 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.58□□□□□ -2
VPS4AQ9UN37 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.58□□□□□ -2
VPS4AQ9UN37 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
VPS4AQ9UN37 Y_RNA.183-201ENST00000363882 113 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 RNU6-944P-201ENST00000364023 107 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 Y_RNA.210-201ENST00000364161 110 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 RNU6-879P-201ENST00000364328 108 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 RNU6-463P-201ENST00000384340 107 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 MIR9-1-201ENST00000385198 89 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 SNORD12B-201ENST00000410433 91 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 ELOCP20-201ENST00000422460 345 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 AC003685.2-201ENST00000422795 395 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.57□□□□□ -2
VPS4AQ9UN37 AL445687.1-201ENST00000439946 251 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 AC090515.1-201ENST00000465295 476 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 AC025465.3-201ENST00000510570 311 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 SNORA25.14-201ENST00000516481 132 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 RNU6-344P-201ENST00000516635 111 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 RNU6-897P-201ENST00000517135 105 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.57□□□□□ -2
VPS4AQ9UN37 CYCSP23-201ENST00000519781 313 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 AC008269.2-201ENST00000561915 1105 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 AC005562.2-201ENST00000618264 111 ntBASIC2.57□□□□□ -2
VPS4AQ9UN37 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.57□□□□□ -2
VPS4AQ9UN37 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.57□□□□□ -2
VPS4AQ9UN37 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS4AQ9UN37 AP006437.1-201ENST00000641440 3685 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 Z82209.1-201ENST00000422141 2135 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 Y_RNA.47-201ENST00000362697 108 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 Y_RNA.144-201ENST00000363521 113 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 RNA5SP68-201ENST00000363885 119 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 SNORA67.2-201ENST00000384300 149 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 Y_RNA.574-201ENST00000384766 95 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.56□□□□□ -2
VPS4AQ9UN37 MIR320B2-201ENST00000408479 138 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 Y_RNA.597-201ENST00000410463 100 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.56□□□□□ -2
VPS4AQ9UN37 AL731563.1-201ENST00000442202 214 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AC091179.3-201ENST00000474761 144 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.56□□□□□ -2
VPS4AQ9UN37 AC023141.11-201ENST00000508864 202 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AC109329.2-201ENST00000519658 482 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AC233702.2-202ENST00000562547 291 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 MIR4659A-201ENST00000580269 81 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AL356280.1-201ENST00000603614 379 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 MZT1P2-201ENST00000604387 248 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 MIR6817-201ENST00000615588 66 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 MIR5739-201ENST00000619803 80 ntBASIC2.56□□□□□ -2
VPS4AQ9UN37 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.56□□□□□ -2
VPS4AQ9UN37 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS4AQ9UN37 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.56□□□□□ -2
VPS4AQ9UN37 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS4AQ9UN37 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS4AQ9UN37 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
VPS4AQ9UN37 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
VPS4AQ9UN37 Y_RNA.179-201ENST00000363844 90 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 RNU6-793P-201ENST00000384233 104 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS4AQ9UN37 RNA5SP210-201ENST00000391034 120 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 SUMO1P4-201ENST00000429430 302 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AL445305.1-201ENST00000432577 575 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AC004386.2-201ENST00000441858 148 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.55□□□□□ -2
VPS4AQ9UN37 AC009237.7-201ENST00000447357 229 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 PCNPP5-201ENST00000452246 481 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.55□□□□□ -2
VPS4AQ9UN37 AC096725.1-201ENST00000514266 313 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 Y_RNA.683-201ENST00000516508 93 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 Y_RNA.713-201ENST00000517013 96 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 RNU6-586P-201ENST00000517265 104 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 MIR3117-201ENST00000584034 78 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AL670379.2-201ENST00000604983 252 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AL357075.2-201ENST00000614906 189 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.55□□□□□ -2
VPS4AQ9UN37 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS4AQ9UN37 MTND5P35-201ENST00000557537 1720 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 Y_RNA.149-201ENST00000363558 117 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 Y_RNA.176-201ENST00000363815 109 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 RNU6-770P-201ENST00000363929 105 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 DEFA7P-201ENST00000382676 285 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 AL079342.1-201ENST00000401460 267 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 RNA5SP504-201ENST00000410676 117 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.54□□□□□ -2
VPS4AQ9UN37 AC027124.2-201ENST00000428249 105 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 AL161788.1-201ENST00000441805 169 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 AC074133.1-201ENST00000515696 183 ntBASIC2.54□□□□□ -2
VPS4AQ9UN37 RNU6-1143P-201ENST00000516125 104 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 146 ms