Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-1026P-201ENST00000384465 108 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RNU6-18P-201ENST00000384527 107 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 MIR153-2-201ENST00000385225 87 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AL591806.2-201ENST00000433122 173 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AC009237.7-201ENST00000447357 229 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AC010531.2-201ENST00000465012 153 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RPL7P42-201ENST00000481005 679 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RPL23AP63-201ENST00000498752 471 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RNA5SP384-201ENST00000516615 116 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.708-201ENST00000516950 96 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RNU6-58P-201ENST00000517143 103 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AL590705.4-201ENST00000532209 134 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 MIR4713-201ENST00000582691 75 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 MIR4801-201ENST00000582704 82 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 CYP2C61P-201ENST00000604072 290 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RBM11P1-201ENST00000604951 799 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AC005014.2-201ENST00000607795 599 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AL355073.2-201ENST00000612106 557 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AC130454.1-201ENST00000622948 401 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RNU6-23P-201ENST00000363283 107 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.405-201ENST00000383979 100 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.451-201ENST00000384200 100 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.524-201ENST00000384564 100 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.561-201ENST00000384694 100 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 RNA5SP489-201ENST00000410986 109 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 AL445305.1-201ENST00000432577 575 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 MTCO1P44-201ENST00000441935 243 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 AC104984.5-201ENST00000586878 94 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 AC012493.3-201ENST00000604494 112 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 AC084768.2-201ENST00000622736 221 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 AL359757.2-201ENST00000624309 274 ntBASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.2-201ENST00000362330 96 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 MIR1283-1-201ENST00000408494 87 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 RNU1-131P-201ENST00000458943 161 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 RN7SKP210-201ENST00000459176 261 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 RNA5SP54-201ENST00000516951 92 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 RNU6-1213P-201ENST00000517075 94 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 UBL5P4-201ENST00000562584 236 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC104581.2-201ENST00000572227 430 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 MIR5701-3-201ENST00000578890 82 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC005730.3-201ENST00000583067 366 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 MIR5701-1-201ENST00000585138 82 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 SNRPGP20-201ENST00000604477 205 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC016727.1-205ENST00000605437 569 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 MIR5701-2-201ENST00000615634 82 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC022513.1-201ENST00000624512 117 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 AC099654.5-201ENST00000636479 350 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 MTND4P12-201ENST00000498999 1377 ntBASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.93□□□□□ -2.1
CPSF3Q9UKF6 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 SNORA72.1-201ENST00000363485 129 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.474-201ENST00000384341 102 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.490-201ENST00000384413 102 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 RNU6-331P-201ENST00000384724 107 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 SNORA75.4-201ENST00000391278 119 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 AC009310.1-201ENST00000414414 451 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 AC007395.1-201ENST00000451333 677 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 snoU13.23-201ENST00000458863 104 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 RNU7-175P-201ENST00000515915 61 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 RNU6-250P-201ENST00000516958 103 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 AC105029.1-201ENST00000520250 669 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 RRN3P3-201ENST00000549207 578 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 MIR4419B-201ENST00000577260 68 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 AL355802.3-201ENST00000607571 545 ntBASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.92□□□□□ -2.1
CPSF3Q9UKF6 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 SNORA67.2-201ENST00000384300 149 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 MIR300-201ENST00000401138 83 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 RNA5SP504-201ENST00000410676 117 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 RNA5SP501-201ENST00000410990 112 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 AL353997.1-201ENST00000432936 108 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.635-201ENST00000459041 101 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 AP000870.1-201ENST00000472927 406 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 HMGN2P9-201ENST00000476875 229 ntBASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.91□□□□□ -2.1
CPSF3Q9UKF6 RNU6-137P-201ENST00000363680 108 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 RNU6-873P-201ENST00000363833 107 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 184 ms