Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU1-62P-201ENST00000362599 164 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 RNU6-873P-201ENST00000363833 107 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 RNU6-280P-201ENST00000364145 104 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 RNU6-767P-201ENST00000384132 107 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 MTND1P2-201ENST00000430604 821 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 AC016717.1-201ENST00000448918 286 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2□□□□□ -2.09
VPS28Q9UK41 RNU1-117P-201ENST00000517041 158 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 AC104581.2-201ENST00000572227 430 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2□□□□□ -2.09
VPS28Q9UK41 AC011494.1-201ENST00000596454 237 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 SNRPGP19-201ENST00000603826 189 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 AC098657.3-201ENST00000620434 263 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 uc_338.20-201ENST00000621563 178 ntBASIC2□□□□□ -2.09
VPS28Q9UK41 Y_RNA.160-201ENST00000363677 92 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 SNORA67.2-201ENST00000384300 149 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 MIR504-201ENST00000385065 83 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 RNU6-159P-201ENST00000391080 106 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 RNU2-40P-201ENST00000410833 196 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 AC060773.1-201ENST00000421698 310 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 AC011406.1-201ENST00000512440 370 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 AC026782.1-201ENST00000512952 449 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 RNU6-1041P-201ENST00000516254 102 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 RNA5SP364-201ENST00000516938 78 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 GNAI2P1-201ENST00000541815 315 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
VPS28Q9UK41 AC104984.5-201ENST00000586878 94 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 AL353149.1-201ENST00000610667 244 ntBASIC1.99□□□□□ -2.09
VPS28Q9UK41 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
VPS28Q9UK41 ZNF355P-201ENST00000427301 3216 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 RNU6-862P-201ENST00000362804 105 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 Y_RNA.405-201ENST00000383979 100 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 Y_RNA.451-201ENST00000384200 100 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 RNU6-601P-201ENST00000384540 107 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 Y_RNA.524-201ENST00000384564 100 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 Y_RNA.561-201ENST00000384694 100 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 RPL37P10-201ENST00000412884 288 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 RPL21P111-201ENST00000418453 477 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AL445685.2-201ENST00000422551 342 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AC099677.2-201ENST00000436385 175 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.98□□□□□ -2.09
VPS28Q9UK41 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS28Q9UK41 RNU7-57P-201ENST00000459540 60 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AC010409.1-201ENST00000487382 476 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 RN7SL274P-201ENST00000492268 272 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 Y_RNA.706-201ENST00000516933 99 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 SNORA31.17-201ENST00000516953 127 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 CBX3P8-201ENST00000532412 525 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AC103810.8-201ENST00000607347 118 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AC100812.1-201ENST00000607622 580 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 AC068205.3-201ENST00000636385 468 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS28Q9UK41 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
VPS28Q9UK41 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS28Q9UK41 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
VPS28Q9UK41 MTND4P12-201ENST00000498999 1377 ntBASIC1.98□□□□□ -2.09
VPS28Q9UK41 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
VPS28Q9UK41 AL356292.1-201ENST00000283110 373 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNU6-112P-201ENST00000363599 104 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNU1-96P-201ENST00000364163 162 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 Y_RNA.279-201ENST00000364763 95 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 Y_RNA.339-201ENST00000365325 102 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 MIR583-201ENST00000384846 75 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNU6-876P-201ENST00000391295 104 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 Y_RNA.594-201ENST00000410373 140 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNU2-20P-201ENST00000410425 191 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNA5SP489-201ENST00000410986 109 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 MTCO3P29-201ENST00000432119 779 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 AC112492.4-201ENST00000456549 352 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNA5SP384-201ENST00000516615 116 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 RNU7-30P-201ENST00000516835 62 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 Y_RNA.708-201ENST00000516950 96 ntBASIC1.97□□□□□ -2.09
VPS28Q9UK41 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS28Q9UK41 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.97□□□□□ -2.09
VPS28Q9UK41 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS28Q9UK41 Y_RNA.2-201ENST00000362330 96 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 Y_RNA.48-201ENST00000362710 103 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 Y_RNA.482-201ENST00000384377 111 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 FGF7P8-201ENST00000402994 292 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 RNU6-1050P-201ENST00000410388 107 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 RNA5SP504-201ENST00000410676 117 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 RNU6-57P-201ENST00000411348 103 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 AL445305.1-201ENST00000432577 575 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 RPL31P58-201ENST00000469001 379 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 AP000870.1-201ENST00000472927 406 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 RNU6-1146P-201ENST00000516282 102 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 AP003033.1-201ENST00000527244 415 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 AC110588.1-201ENST00000559699 137 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 UBL5P4-201ENST00000562584 236 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS28Q9UK41 uc_338.5-201ENST00000611839 155 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 MIR7843-201ENST00000622274 79 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 snoZ196.1-201ENST00000625269 89 ntBASIC1.96□□□□□ -2.1
VPS28Q9UK41 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
VPS28Q9UK41 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
VPS28Q9UK41 RNU6-661P-201ENST00000362409 107 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 RNU6-845P-201ENST00000362578 103 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 Y_RNA.166-201ENST00000363730 102 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms