| CNTNAP2 | Q9UHC6 | RNU6-1179P-201 | ENST00000384667 | 107 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.580-201 | ENST00000391004 | 95 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL512844.2-201 | ENST00000433990 | 593 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL118523.1-201 | ENST00000444436 | 480 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AP001025.1-201 | ENST00000486139 | 332 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC091959.1-201 | ENST00000495857 | 238 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC068658.1-201 | ENST00000507509 | 388 nt | TSL 2 BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | LNX1-AS1-202 | ENST00000510785 | 550 nt | TSL 2 BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU4-57P-201 | ENST00000515980 | 135 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SNORD116-25-201 | ENST00000516517 | 92 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL590705.4-201 | ENST00000532209 | 134 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | LINC02095-202 | ENST00000543512 | 323 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | ACTG1P17-203 | ENST00000561222 | 537 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC090510.1-201 | ENST00000567456 | 425 nt | TSL 3 BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR8076-201 | ENST00000611401 | 83 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR6130-201 | ENST00000619419 | 109 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC233981.2-201 | ENST00000611524 | 1614 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | TEX9-207 | ENST00000560582 | 2005 nt | TSL 3 BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | UBE2WP1-201 | ENST00000362030 | 340 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU4-90P-201 | ENST00000362773 | 141 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-653P-201 | ENST00000363074 | 106 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-926P-201 | ENST00000384075 | 107 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SNORD63-201 | ENST00000384262 | 68 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.623-201 | ENST00000411128 | 95 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL358234.1-201 | ENST00000421132 | 273 nt | TSL 5 BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL356320.1-201 | ENST00000429616 | 163 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RPS12P2-201 | ENST00000439728 | 269 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MRPS10P1-201 | ENST00000448483 | 130 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC010099.1-201 | ENST00000455434 | 375 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RPS27P26-201 | ENST00000494583 | 239 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AIG1P1-201 | ENST00000503376 | 148 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | PDCD5P2-201 | ENST00000507570 | 312 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC097716.1-201 | ENST00000509136 | 180 nt | TSL 2 BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU5F-8P-201 | ENST00000515941 | 111 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC021269.2-201 | ENST00000532318 | 330 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC112693.2-201 | ENST00000556538 | 232 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC104581.2-201 | ENST00000572227 | 430 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR4782-201 | ENST00000577987 | 79 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR4524B-201 | ENST00000581569 | 115 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC060766.3-201 | ENST00000591442 | 263 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | TTC28-AS1_2.1-201 | ENST00000611117 | 157 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | ZNRD1-AS1_3.8-201 | ENST00000611686 | 104 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | Z84484.1-202 | ENST00000612718 | 60 nt | TSL 5 BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC010297.1-201 | ENST00000623948 | 149 nt | BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | HSPA4L-202 | ENST00000505726 | 2639 nt | TSL 2 BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | PRKD3-201 | ENST00000234179 | 5900 nt | APPRIS P1 TSL 1 (best) BASIC | 2.63 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SEL1L2-201 | ENST00000284951 | 2224 nt | APPRIS P1 TSL 5 BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-151P-201 | ENST00000364158 | 107 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-326P-201 | ENST00000365480 | 107 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1289P-201 | ENST00000384431 | 106 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | FO393413.1-201 | ENST00000402892 | 195 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNA5SP425-201 | ENST00000410336 | 112 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU2-61P-201 | ENST00000411069 | 191 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL096701.2-201 | ENST00000416920 | 238 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RAB28P5-201 | ENST00000427490 | 651 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC009237.8-201 | ENST00000445492 | 379 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | UQCRBP2-201 | ENST00000447827 | 297 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU7-87P-201 | ENST00000459343 | 62 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RPL37P6-201 | ENST00000460682 | 294 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | UBL5P3-201 | ENST00000475112 | 231 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | ANXA2P1-201 | ENST00000505539 | 926 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SEM1P1-201 | ENST00000506694 | 209 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC091887.1-201 | ENST00000514002 | 439 nt | TSL 5 BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR892C-201 | ENST00000516410 | 77 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-62P-201 | ENST00000516526 | 102 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | CASP1P1-201 | ENST00000526345 | 212 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC027288.2-201 | ENST00000553028 | 243 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC055872.1-201 | ENST00000570978 | 278 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL356575.1-201 | ENST00000603008 | 283 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.772-201 | ENST00000606692 | 102 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC067747.1-201 | ENST00000608026 | 250 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC002064.3-201 | ENST00000623448 | 346 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC097372.5-201 | ENST00000623665 | 376 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR4275-201 | ENST00000636486 | 87 nt | BASIC | 2.62 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | LCORL-202 | ENST00000382224 | 4984 nt | APPRIS ALT2 TSL 5 BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC003984.1-201 | ENST00000450977 | 4104 nt | TSL 1 (best) BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | U8.2-201 | ENST00000363156 | 134 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.215-201 | ENST00000364204 | 112 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SNORD14B-201 | ENST00000364533 | 90 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | U3.13-201 | ENST00000364804 | 214 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | DEFA7P-201 | ENST00000382676 | 285 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-933P-201 | ENST00000384424 | 107 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR487A-201 | ENST00000385009 | 80 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | LINC01701-201 | ENST00000419614 | 451 nt | TSL 2 BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | HMGN2P30-201 | ENST00000423237 | 256 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AL390961.1-201 | ENST00000446557 | 319 nt | TSL 2 BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1037P-201 | ENST00000459571 | 107 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC063944.1-201 | ENST00000496943 | 295 nt | TSL 3 BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC026436.1-201 | ENST00000510537 | 270 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | RNU6-612P-201 | ENST00000516909 | 102 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SUMO2P18-201 | ENST00000518873 | 252 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC233702.2-202 | ENST00000562547 | 291 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR5692A1-201 | ENST00000580523 | 69 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC091965.1-202 | ENST00000607662 | 397 nt | TSL 3 BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | AC046143.2-201 | ENST00000609789 | 160 nt | BASIC | 2.61 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MAP3K2-203 | ENST00000409947 | 10992 nt | APPRIS P1 TSL 1 (best) BASIC | 2.6 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | OR4G2P-202 | ENST00000641004 | 1759 nt | BASIC | 2.6 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | OSTN-201 | ENST00000339051 | 402 nt | APPRIS P1 TSL 1 (best) BASIC | 2.6 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | MIR6073-201 | ENST00000352083 | 89 nt | BASIC | 2.6 | □□□□□ -1.99 | | |
| CNTNAP2 | Q9UHC6 | SNORA63.4-201 | ENST00000362763 | 126 nt | BASIC | 2.6 | □□□□□ -1.99 | | |