Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RNU4-9P-201ENST00000364951 139 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 SNORD116-11-201ENST00000383882 92 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 RNU6-1235P-201ENST00000384559 107 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 MIR934-201ENST00000401241 83 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 EBAG9P1-201ENST00000418955 543 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC099677.2-201ENST00000436385 175 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC009474.2-201ENST00000451383 136 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC079354.2-201ENST00000453523 154 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 RNU6-498P-201ENST00000459468 107 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AL163540.1-201ENST00000485382 386 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 HMGN1P13-201ENST00000505795 138 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 Y_RNA.675-201ENST00000516389 149 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AL359821.1-201ENST00000605519 182 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC124303.1-201ENST00000605703 360 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC019193.3-201ENST00000609144 554 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 MIR8074-201ENST00000615081 81 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC006504.8-201ENST00000621046 635 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 AC090617.10-201ENST00000624308 134 ntBASIC1.29□□□□□ -2.2
CLCF1Q9UBD9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 ZNF204P-201ENST00000416749 2397 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU1-96P-201ENST00000364163 162 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU6-1019P-201ENST00000364424 107 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU6-975P-201ENST00000384296 105 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU6-296P-201ENST00000384608 107 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 MIR520A-201ENST00000384862 85 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 MIR586-201ENST00000385035 97 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 MIR549A-201ENST00000385268 96 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 MIR320A-201ENST00000385302 82 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC060773.1-201ENST00000421698 310 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC027575.1-201ENST00000481064 460 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC025465.3-201ENST00000510570 311 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC011406.1-201ENST00000512440 370 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU6-1041P-201ENST00000516254 102 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU6-970P-201ENST00000516312 107 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 RNU1-92P-201ENST00000517017 135 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 MIR4421-201ENST00000578133 69 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AP003465.2-201ENST00000602571 373 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AL353149.1-201ENST00000610667 244 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 AC010615.1-201ENST00000594254 1764 ntBASIC1.28□□□□□ -2.2
CLCF1Q9UBD9 U8.1-201ENST00000362843 134 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 Y_RNA.157-201ENST00000363638 102 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 SNORD115-32-201ENST00000364079 82 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU6-1305P-201ENST00000364353 104 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU6-534P-201ENST00000364877 106 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 Y_RNA.295-201ENST00000364918 102 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU6-245P-201ENST00000384020 107 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU6-1013P-201ENST00000384180 107 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 Y_RNA.516-201ENST00000384541 124 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RN7SKP51-201ENST00000410781 304 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU2-7P-201ENST00000410794 178 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU6-321P-201ENST00000410912 106 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 AC004965.1-201ENST00000413033 213 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 UBE2V1P8-201ENST00000437166 265 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 HMGN2P9-201ENST00000476875 229 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 MTCYBP18-201ENST00000501056 747 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNA5SP384-201ENST00000516615 116 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 RNU6-344P-201ENST00000516635 111 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 SNORA59B-202ENST00000578183 701 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CLCF1Q9UBD9 MIR424-201ENST00000362227 98 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 RNU6-414P-201ENST00000363705 104 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 SNORA7.1-201ENST00000363750 139 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 SNORD115-8-201ENST00000363856 82 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 SNORD115-38-201ENST00000365037 82 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 RNU6-439P-201ENST00000384188 106 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 Y_RNA.453-201ENST00000384223 109 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 RNU6-1215P-201ENST00000384441 102 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 MIR32-201ENST00000384965 70 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 AC004866.1-201ENST00000411748 78 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 CST2P1-201ENST00000425770 87 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 MTCO3P29-201ENST00000432119 779 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 MTND1P34-201ENST00000438556 671 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 MTND4LP16-201ENST00000440828 295 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 AC092473.1-201ENST00000441098 221 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 AC069257.2-201ENST00000441819 155 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 AC016717.1-201ENST00000448918 286 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 AC023790.1-201ENST00000482174 347 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 RPL36AP21-201ENST00000490372 323 ntBASIC1.26□□□□□ -2.21
CLCF1Q9UBD9 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 177.3 ms