Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MTND5P9-201ENST00000503854 1755 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 ZNF72P-201ENST00000425869 1908 ntBASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS54Q9P1Q0 RNU6-862P-201ENST00000362804 105 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.301-201ENST00000364990 103 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 MIR934-201ENST00000401241 83 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC099677.2-201ENST00000436385 175 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 RNU6-1041P-201ENST00000516254 102 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 RNA5SP61-201ENST00000516453 100 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 RNU6-566P-201ENST00000516790 107 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 SNORA31.17-201ENST00000516953 127 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 RNA5SP454-201ENST00000517231 127 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 DNAJC19P9-201ENST00000555084 351 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 MIR4753-201ENST00000585119 83 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 SNRPGP20-201ENST00000604477 205 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC093913.1-201ENST00000614178 329 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC002553.4-201ENST00000616896 331 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AC137590.2-201ENST00000619709 240 ntBASIC1.63□□□□□ -2.15
VPS54Q9P1Q0 AP000648.3-201ENST00000623539 4507 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 BX322639.1-202ENST00000423987 2213 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.86-201ENST00000363020 111 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 RNU6-1305P-201ENST00000364353 104 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 RNU4-9P-201ENST00000364951 139 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 MIR1277-201ENST00000408536 78 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 RN7SKP51-201ENST00000410781 304 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 AC060773.1-201ENST00000421698 310 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 AL445305.1-201ENST00000432577 575 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 MTND1P4-201ENST00000435196 415 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 MTATP6P13-201ENST00000438531 667 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 SNRPGP13-201ENST00000442212 177 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 AC009237.7-201ENST00000447357 229 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 NFU1P2-201ENST00000448700 469 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 SUMO2P18-201ENST00000518873 252 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 MIR3198-2-201ENST00000577868 80 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 AP003465.2-201ENST00000602571 373 ntBASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.62□□□□□ -2.15
VPS54Q9P1Q0 RNU6-112P-201ENST00000363599 104 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 RNU6-1059P-201ENST00000363752 98 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 RNU6-1013P-201ENST00000384180 107 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 RNU6-439P-201ENST00000384188 106 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 FCF1P9-201ENST00000412546 282 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 RPL21P111-201ENST00000418453 477 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 AL357134.1-201ENST00000445848 426 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 ATP5J2P3-201ENST00000451550 258 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 AC069439.1-201ENST00000494739 167 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 AC067942.3-201ENST00000512025 362 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 RNA5SP384-201ENST00000516615 116 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 SNORA44.1-201ENST00000517031 108 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 MIR4273-201ENST00000582824 84 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 MIR6128-201ENST00000615528 109 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS54Q9P1Q0 MTND4P5-201ENST00000435821 1374 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 U8.1-201ENST00000362843 134 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.140-201ENST00000363474 103 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 EIF1P1-201ENST00000421436 341 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 USP9YP30-201ENST00000430729 455 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 snoU13.30-201ENST00000458951 104 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 RNU1-98P-201ENST00000458992 160 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 RPL30P10-201ENST00000488148 337 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.682-201ENST00000516457 100 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 RNU6-856P-201ENST00000516959 98 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 RNU6-58P-201ENST00000517143 103 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 AC018638.8-201ENST00000588755 281 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 AC126177.8-201ENST00000618339 1015 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 AC009248.2-201ENST00000619826 254 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 AC068205.3-201ENST00000636385 468 ntBASIC1.6□□□□□ -2.15
VPS54Q9P1Q0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.48-201ENST00000362710 103 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 RNU6-975P-201ENST00000384296 105 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 Y_RNA.533-201ENST00000384596 114 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 RNU6-296P-201ENST00000384608 107 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 MIR30A-201ENST00000385092 71 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 RPL30P16-201ENST00000419341 429 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 MTND1P17-201ENST00000448961 204 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 RNU6-329P-201ENST00000459618 107 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 HMGN2P9-201ENST00000476875 229 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 AC011406.1-201ENST00000512440 370 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 RNU6-948P-201ENST00000516374 107 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 RNU1-117P-201ENST00000517041 158 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 AL161670.1-201ENST00000554348 137 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms