Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC121333.1-201ENST00000567488 2709 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU6-1287P-201ENST00000362914 107 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 SNORA50A-201ENST00000384225 134 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RNU6-1060P-201ENST00000384664 107 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC022364.2-201ENST00000457963 554 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RBBP4P6-201ENST00000508098 202 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RNA5SP121-201ENST00000516537 101 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC022616.3-201ENST00000523940 148 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AL391840.1-201ENST00000571144 367 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 MIR4667-201ENST00000578933 66 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 7SK.7-201ENST00000603504 247 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AL031281.1-201ENST00000604049 488 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AP001836.1-201ENST00000604675 523 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AP001596.2-201ENST00000608410 312 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC006001.4-201ENST00000622243 395 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RNU6-877P-201ENST00000383868 107 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RNU6-393P-201ENST00000384475 107 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 SNORA80D-201ENST00000384488 135 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 SNORD73A-201ENST00000386062 65 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 MIR454-201ENST00000390180 115 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 SNORA75.2-201ENST00000391138 150 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RNA5SP299-201ENST00000391203 116 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 SNORA75.3-201ENST00000391231 150 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC004866.1-201ENST00000411748 78 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC093019.1-201ENST00000443135 252 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC016717.1-201ENST00000448918 286 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 RPS29P27-201ENST00000463711 170 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC098869.1-201ENST00000481627 292 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.26□□□□□ -2.37
SCN3AQ9NY46 MTND4LP26-201ENST00000518144 282 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 DEFB131C-201ENST00000528817 165 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 U6.108-201ENST00000637764 58 ntBASIC0.26□□□□□ -2.37
SCN3AQ9NY46 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU6-1240P-201ENST00000365155 104 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.412-201ENST00000384001 104 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU6-1067P-201ENST00000384752 107 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU6-550P-201ENST00000391057 101 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 MTCYBP36-201ENST00000404146 440 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU6-757P-201ENST00000410334 100 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU4-46P-201ENST00000410818 138 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AL365184.2-201ENST00000431139 435 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC233266.1-201ENST00000454518 96 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU7-138P-201ENST00000459479 64 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 EIF1P4-201ENST00000572664 335 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC091178.2-201ENST00000584401 117 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AL157392.4-201ENST00000609756 345 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC242852.1-201ENST00000612151 96 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC244015.1-201ENST00000622301 99 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 U6.114-201ENST00000636407 96 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC068647.2-201ENST00000637380 353 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 MIR6759-201ENST00000638110 65 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC006927.3-201ENST00000638789 384 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU6-222P-201ENST00000362438 107 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 SNORD115-8-201ENST00000363856 82 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 SNORD115-38-201ENST00000365037 82 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.330-201ENST00000365230 109 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.504-201ENST00000384481 104 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.608-201ENST00000410647 95 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC244098.3-201ENST00000424803 96 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC112204.1-201ENST00000502591 103 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 SNORA70.12-201ENST00000516084 153 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC107308.1-201ENST00000615897 301 ntBASIC0.25□□□□□ -2.37
SCN3AQ9NY46 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.25□□□□□ -2.37
SCN3AQ9NY46 AC023934.1-201ENST00000574529 2389 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
SCN3AQ9NY46 MIR103A2-201ENST00000362154 78 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 RNU6-501P-201ENST00000364072 100 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.274-201ENST00000364714 101 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 SNORA67.2-201ENST00000384300 149 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 SNORA12.1-201ENST00000390873 148 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 SNORD12-201ENST00000391002 90 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 RNA5SP323-201ENST00000391094 133 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
SCN3AQ9NY46 MIR208B-201ENST00000401172 77 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 RPS26P42-201ENST00000413485 326 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 MRPS18CP6-201ENST00000423587 223 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 AL593851.1-201ENST00000426171 157 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 AC084290.1-201ENST00000434995 374 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 FABP5P4-201ENST00000437203 171 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 MTCO2P3-201ENST00000442543 421 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.24□□□□□ -2.37
SCN3AQ9NY46 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
SCN3AQ9NY46 snoU13.25-201ENST00000458945 104 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 RNU7-21P-201ENST00000459430 62 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 RNU6-948P-201ENST00000516374 107 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms