Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AC010409.1-201ENST00000487382 476 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AC107393.1-201ENST00000512403 346 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU6-344P-201ENST00000516635 111 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU6-58P-201ENST00000517143 103 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU1-54P-201ENST00000517181 120 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MIR5094-201ENST00000578766 85 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AP000942.3-201ENST00000603702 160 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MIR6845-201ENST00000613182 61 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AC009248.2-201ENST00000619826 254 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU1-17P-201ENST00000363022 152 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RNU6-112P-201ENST00000363599 104 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 SNORA16.1-201ENST00000364597 132 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RNU6-1235P-201ENST00000384559 107 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RNU6-174P-201ENST00000410406 106 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RPL23AP36-201ENST00000413895 458 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 AL139396.1-201ENST00000421137 167 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 AC074290.1-201ENST00000448883 135 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RNU6-498P-201ENST00000459468 107 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RNU6-329P-201ENST00000459618 107 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.62□□□□□ -2.15
DDX28Q9NUL7 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.62□□□□□ -2.15
DDX28Q9NUL7 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.62□□□□□ -2.15
DDX28Q9NUL7 AC098679.4-201ENST00000624241 654 ntBASIC1.62□□□□□ -2.15
DDX28Q9NUL7 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.62□□□□□ -2.15
DDX28Q9NUL7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.62□□□□□ -2.15
DDX28Q9NUL7 RNU6-862P-201ENST00000362804 105 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 Y_RNA.86-201ENST00000363020 111 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 RNU6-1305P-201ENST00000364353 104 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 SNORA67.2-201ENST00000384300 149 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC060773.1-201ENST00000421698 310 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC099677.2-201ENST00000436385 175 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC112492.4-201ENST00000456549 352 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 HMGN2P9-201ENST00000476875 229 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 FO393415.2-201ENST00000480085 343 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 RNU6-970P-201ENST00000516312 107 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 SNORA59B-202ENST00000578183 701 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 MIR6128-201ENST00000615528 109 ntBASIC1.61□□□□□ -2.15
DDX28Q9NUL7 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
DDX28Q9NUL7 Y_RNA.238-201ENST00000364441 102 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 Y_RNA.319-201ENST00000365138 92 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNU6-17P-201ENST00000384245 107 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNU6-18P-201ENST00000384527 107 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AC243428.1-201ENST00000421099 264 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AC016717.1-201ENST00000448918 286 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 SNORD5.1-201ENST00000458800 75 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNU1-98P-201ENST00000458992 160 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RN7SKP210-201ENST00000459176 261 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RPL23AP63-201ENST00000498752 471 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AC011406.1-201ENST00000512440 370 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNU6-1041P-201ENST00000516254 102 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNU6-358P-201ENST00000516564 75 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNA5SP384-201ENST00000516615 116 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 SNORA31.17-201ENST00000516953 127 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 SNORA44.1-201ENST00000517031 108 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.6□□□□□ -2.15
DDX28Q9NUL7 MIR4419B-201ENST00000577260 68 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 MIR4790-201ENST00000577799 79 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 MIR3618-201ENST00000580330 88 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 AL353149.1-201ENST00000610667 244 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.6□□□□□ -2.15
DDX28Q9NUL7 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.6□□□□□ -2.15
DDX28Q9NUL7 RNU6-661P-201ENST00000362409 107 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RNU1-62P-201ENST00000362599 164 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 Y_RNA.164-201ENST00000363709 102 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.59□□□□□ -2.15
DDX28Q9NUL7 Y_RNA.490-201ENST00000384413 102 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RNU6-541P-201ENST00000384709 110 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AL117342.1-201ENST00000404861 406 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AL356776.1-201ENST00000406574 447 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RNA5SP247-201ENST00000411181 105 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RPL21P111-201ENST00000418453 477 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.59□□□□□ -2.15
DDX28Q9NUL7 USP9YP30-201ENST00000430729 455 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.59□□□□□ -2.15
DDX28Q9NUL7 FGF7P6-202ENST00000451282 293 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RNU7-57P-201ENST00000459540 60 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RPL30P10-201ENST00000488148 337 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 RNU7-175P-201ENST00000515915 61 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms