Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC099654.10-201ENST00000640395 161 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
NUP88Q99567 MTND5P35-201ENST00000557537 1720 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
NUP88Q99567 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.84□□□□□ -1.95
NUP88Q99567 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
NUP88Q99567 Z82195.2-201ENST00000612348 18351 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 RNU1-76P-201ENST00000362903 159 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 SNORA25.6-201ENST00000364121 118 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 RNU6-450P-201ENST00000364654 107 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 RNU6-708P-201ENST00000384217 107 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 SNORD12B-201ENST00000410433 91 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 RNU4-53P-201ENST00000410828 140 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.84□□□□□ -1.95
NUP88Q99567 AC091179.3-201ENST00000474761 144 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 RNU6-991P-201ENST00000516168 107 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 RNU6-107P-201ENST00000516643 102 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.84□□□□□ -1.95
NUP88Q99567 MZT1P2-201ENST00000604387 248 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 AC124312.5-201ENST00000604451 268 ntBASIC2.84□□□□□ -1.95
NUP88Q99567 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.84□□□□□ -1.96
NUP88Q99567 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
NUP88Q99567 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
NUP88Q99567 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NUP88Q99567 Y_RNA.27-201ENST00000362540 103 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 Y_RNA.158-201ENST00000363651 101 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 RNU6-1305P-201ENST00000364353 104 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 Y_RNA.527-201ENST00000384573 102 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 SNORD78.2-201ENST00000391076 69 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 AC004866.1-201ENST00000411748 78 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 Z98742.3-201ENST00000418637 326 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.83□□□□□ -1.96
NUP88Q99567 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.83□□□□□ -1.96
NUP88Q99567 IFNA11P-201ENST00000446352 526 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 UQCRBP2-201ENST00000447827 297 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 AC112492.4-201ENST00000456549 352 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.83□□□□□ -1.96
NUP88Q99567 Y_RNA.721-201ENST00000517207 102 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 AP002770.2-201ENST00000543613 532 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.83□□□□□ -1.96
NUP88Q99567 MIR5092-201ENST00000583139 88 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 MIR4753-201ENST00000585119 83 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 AL390123.1-201ENST00000603216 237 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.83□□□□□ -1.96
NUP88Q99567 AC080100.1-201ENST00000624239 5356 ntBASIC2.83□□□□□ -1.96
NUP88Q99567 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.82□□□□□ -1.96
NUP88Q99567 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
NUP88Q99567 RNU6-545P-201ENST00000362681 104 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 RNA5SP456-201ENST00000364002 114 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 RNU4-50P-201ENST00000364361 141 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 RNY3P4-201ENST00000384428 101 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.82□□□□□ -1.96
NUP88Q99567 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.82□□□□□ -1.96
NUP88Q99567 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.82□□□□□ -1.96
NUP88Q99567 ATP5EP1-201ENST00000510257 156 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 RNU6-344P-201ENST00000516635 111 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 RN7SKP49-201ENST00000516675 260 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 AC021269.2-201ENST00000532318 330 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 RRN3P3-201ENST00000549207 578 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.82□□□□□ -1.96
NUP88Q99567 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.82□□□□□ -1.96
NUP88Q99567 AL162373.1-201ENST00000620433 407 ntBASIC2.82□□□□□ -1.96
NUP88Q99567 ZNF658B-202ENST00000615961 3375 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
NUP88Q99567 Y_RNA.415-201ENST00000384012 112 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 RNU6-611P-201ENST00000384276 104 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 RNU6-318P-201ENST00000384283 103 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 MIR329-1-201ENST00000385028 80 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 RNA5SP213-201ENST00000391031 106 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 HMGN2P18-201ENST00000450680 270 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 AC034114.1-201ENST00000520293 285 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.81□□□□□ -1.96
NUP88Q99567 MIR3126-201ENST00000577443 74 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 MIR4680-201ENST00000580906 66 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 AL078596.1-201ENST00000624856 447 ntBASIC2.81□□□□□ -1.96
NUP88Q99567 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
NUP88Q99567 MIR6073-201ENST00000352083 89 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 SNORD87-201ENST00000364849 89 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 SNORA70B-201ENST00000384210 135 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 MIR606-201ENST00000384851 96 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 MIR300-201ENST00000401138 83 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 RPS12P2-201ENST00000439728 269 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 FCF1P4-201ENST00000448326 183 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 AC074290.1-201ENST00000448883 135 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 AC018868.1-201ENST00000491307 315 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.8□□□□□ -1.96
NUP88Q99567 AC026436.1-201ENST00000510537 270 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 RNA5SP281-201ENST00000516504 135 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.8□□□□□ -1.96
NUP88Q99567 AC103810.6-201ENST00000606708 136 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 AC011476.5-201ENST00000615594 130 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
NUP88Q99567 U6.92-201ENST00000636464 89 ntBASIC2.8□□□□□ -1.96
NUP88Q99567 RNA5SP432-201ENST00000362480 116 ntBASIC2.79□□□□□ -1.96
NUP88Q99567 VTRNA1-1-201ENST00000363120 99 ntBASIC2.79□□□□□ -1.96
NUP88Q99567 SNORD31B-201ENST00000364977 69 ntBASIC2.79□□□□□ -1.96
NUP88Q99567 Y_RNA.455-201ENST00000384230 98 ntBASIC2.79□□□□□ -1.96
NUP88Q99567 Y_RNA.471-201ENST00000384312 102 ntBASIC2.79□□□□□ -1.96
NUP88Q99567 RNA5SP181-201ENST00000410246 98 ntBASIC2.79□□□□□ -1.96
NUP88Q99567 AL118496.2-201ENST00000448300 230 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms