Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNA5SP475-201ENST00000410568 110 ntBASIC-1.67□□□□□ -2.68
VPS13AQ96RL7 RNA5SP484-201ENST00000458857 111 ntBASIC-1.67□□□□□ -2.68
VPS13AQ96RL7 SRRM1P2-201ENST00000464531 1192 ntBASIC-1.67□□□□□ -2.68
VPS13AQ96RL7 RNU6-727P-201ENST00000363592 107 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 RNA5SP493-201ENST00000364115 91 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 RNU6-576P-201ENST00000390854 102 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 AC007014.2-201ENST00000615581 479 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 AC084368.1-201ENST00000620935 65 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 MTND5P18-201ENST00000445624 1801 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 MTCYBP38-201ENST00000417160 1123 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 SNORA70.16-201ENST00000516390 95 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 AL442163.3-201ENST00000554110 156 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 AC090897.1-201ENST00000580909 226 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 AC134878.1-201ENST00000619901 243 ntBASIC-1.68□□□□□ -2.68
VPS13AQ96RL7 MTCYBP42-201ENST00000444653 1130 ntBASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 MIR6864-201ENST00000617935 70 ntBASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 ELOCP9-201ENST00000418624 239 ntBASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 AC139769.3-201ENST00000618383 175 ntBASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 NDUFAF4P4-201ENST00000454883 502 ntBASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 SMURF2P1-201ENST00000514992 481 ntBASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.69□□□□□ -2.68
VPS13AQ96RL7 Y_RNA.370-201ENST00000365589 108 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 RNU4-27P-201ENST00000410889 139 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 AC010655.3-201ENST00000478818 450 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 MTCYBP40-201ENST00000509390 1135 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 AP003733.2-201ENST00000529409 171 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 MIR889-201ENST00000401280 79 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 RNU6-721P-201ENST00000410155 105 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 RNU6-1261P-201ENST00000517194 104 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 MIR3976-201ENST00000606807 139 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-1.7□□□□□ -2.68
VPS13AQ96RL7 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AC018926.1-201ENST00000616335 435 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AL357139.1-201ENST00000407792 426 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 TPT1P7-201ENST00000458300 517 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 RNU6-901P-201ENST00000384593 106 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AL451046.2-201ENST00000403074 277 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AC244505.6-201ENST00000452829 130 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AC107401.1-201ENST00000503426 685 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 RNU6-964P-201ENST00000516524 69 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AC009268.1-201ENST00000561352 1203 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 NDUFA8P1-201ENST00000605525 367 ntBASIC-1.71□□□□□ -2.68
VPS13AQ96RL7 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC-1.72□□□□□ -2.68
VPS13AQ96RL7 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-1.72□□□□□ -2.68
VPS13AQ96RL7 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC-1.72□□□□□ -2.69
VPS13AQ96RL7 MIR653-201ENST00000385279 96 ntBASIC-1.72□□□□□ -2.69
VPS13AQ96RL7 TAF13P2-201ENST00000416876 286 ntBASIC-1.72□□□□□ -2.69
VPS13AQ96RL7 OR6C5P-201ENST00000452388 923 ntBASIC-1.72□□□□□ -2.69
VPS13AQ96RL7 BNIP3P6-201ENST00000549284 499 ntBASIC-1.72□□□□□ -2.69
VPS13AQ96RL7 SNORD115-44-201ENST00000365391 82 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AL117339.3-201ENST00000418733 162 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 USP9YP22-201ENST00000438971 294 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AL360271.2-201ENST00000447710 161 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 MIR4677-201ENST00000584153 80 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AL713998.2-201ENST00000604538 1198 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 RNU6-86P-201ENST00000606534 107 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AC099786.3-201ENST00000565735 1410 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 RNA5SP405-201ENST00000363059 114 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 RNU6-1019P-201ENST00000364424 107 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 UBE2Q2P9-201ENST00000490086 202 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AP003072.1-201ENST00000531740 145 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 RNU6-263P-201ENST00000363811 107 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 RNU6-505P-201ENST00000384427 107 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 SNORD56B-201ENST00000384713 71 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AL590135.1-201ENST00000422215 156 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AC019205.3-201ENST00000424573 156 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AC016700.2-201ENST00000446011 156 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 AC015911.1-201ENST00000495111 156 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 SNORD22.1-201ENST00000516331 125 ntBASIC-1.73□□□□□ -2.69
VPS13AQ96RL7 RNU6-1189P-201ENST00000383958 107 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 MIR518B-201ENST00000385127 83 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 MTND2P26-201ENST00000528255 1029 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 AC006600.1-201ENST00000572529 153 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 AC005609.4-201ENST00000625071 447 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 SNORD38B-202ENST00000625943 69 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 RNY1P11-201ENST00000363759 113 ntBASIC-1.74□□□□□ -2.69
VPS13AQ96RL7 AC024589.1-201ENST00000512207 263 ntBASIC-1.74□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms