Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 Y_RNA.402-201ENST00000383972 102 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 Y_RNA.436-201ENST00000384097 102 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 RNU1-78P-201ENST00000391248 165 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 RNU2-7P-201ENST00000410794 178 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 RNU6-373P-201ENST00000411247 98 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.57□□□□□ -2.16
ZNF560Q96MR9 MTCO3P29-201ENST00000432119 779 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 MTCO3P18-201ENST00000440206 761 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 snoU13.30-201ENST00000458951 104 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 RN7SKP210-201ENST00000459176 261 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 AC005908.1-201ENST00000468701 347 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.57□□□□□ -2.16
ZNF560Q96MR9 RNU6-344P-201ENST00000516635 111 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 RNU6-1198P-201ENST00000516904 67 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.57□□□□□ -2.16
ZNF560Q96MR9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.57□□□□□ -2.16
ZNF560Q96MR9 AC126177.8-201ENST00000618339 1015 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 MIR338-201ENST00000636369 67 ntBASIC1.57□□□□□ -2.16
ZNF560Q96MR9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
ZNF560Q96MR9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
ZNF560Q96MR9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
ZNF560Q96MR9 RNU6-1252P-201ENST00000363054 104 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 SNORD115-32-201ENST00000364079 82 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 RNU4-9P-201ENST00000364951 139 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 SNORA67.2-201ENST00000384300 149 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 MIR549A-201ENST00000385268 96 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 MIR1267-201ENST00000408723 78 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AC016907.1-201ENST00000419483 435 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 JTBP1-201ENST00000441314 247 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AC016717.1-201ENST00000448918 286 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 Y_RNA.638-201ENST00000459374 113 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.56□□□□□ -2.16
ZNF560Q96MR9 RNU1-92P-201ENST00000517017 135 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 RNA5SP437-201ENST00000517249 129 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AL161670.1-201ENST00000554348 137 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 MIR4422-201ENST00000581938 83 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 MIR3672-201ENST00000584290 82 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 POLR3GP2-201ENST00000588366 668 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AC023043.2-201ENST00000589678 1026 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 AC024614.3-201ENST00000637860 256 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
ZNF560Q96MR9 ZNF209P-201ENST00000593450 2304 ntBASIC1.56□□□□□ -2.16
ZNF560Q96MR9 ZNF204P-201ENST00000416749 2397 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 Y_RNA.9-201ENST00000362354 101 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNY4P14-201ENST00000363656 96 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNU6-1090P-201ENST00000364065 94 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNU6-1305P-201ENST00000364353 104 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 Y_RNA.414-201ENST00000384011 101 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNU6-245P-201ENST00000384020 107 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RN7SKP51-201ENST00000410781 304 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 BTF3P4-201ENST00000418852 495 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNU7-95P-201ENST00000459222 64 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.55□□□□□ -2.16
ZNF560Q96MR9 RNU6-1146P-201ENST00000516282 102 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.55□□□□□ -2.16
ZNF560Q96MR9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 AC008873.1-201ENST00000625051 138 ntBASIC1.55□□□□□ -2.16
ZNF560Q96MR9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
ZNF560Q96MR9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
ZNF560Q96MR9 MIR320A-201ENST00000385302 82 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 AP1B1P2-201ENST00000416196 106 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 AC007098.1-201ENST00000420122 367 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 AL590632.1-201ENST00000424289 371 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.54□□□□□ -2.16
ZNF560Q96MR9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.54□□□□□ -2.16
ZNF560Q96MR9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.54□□□□□ -2.16
ZNF560Q96MR9 EIF1P4-201ENST00000572664 335 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 AC006504.8-201ENST00000621046 635 ntBASIC1.54□□□□□ -2.16
ZNF560Q96MR9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.54□□□□□ -2.16
ZNF560Q96MR9 snoU2-30.2-201ENST00000362805 70 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 U8.1-201ENST00000362843 134 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 Y_RNA.67-201ENST00000362870 100 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 RNU6-137P-201ENST00000363680 108 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 Y_RNA.212-201ENST00000364177 102 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 SNORA72.2-201ENST00000365028 127 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 SNORD116-11-201ENST00000383882 92 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 MIR515-2-201ENST00000384883 83 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 MIR515-1-201ENST00000384884 83 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 MIR517A-201ENST00000385001 87 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.53□□□□□ -2.16
ZNF560Q96MR9 SNRPGP13-201ENST00000442212 177 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 AC009474.2-201ENST00000451383 136 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 RNU7-57P-201ENST00000459540 60 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 ACA59.1-201ENST00000515966 143 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 snoU13.31-201ENST00000607291 104 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 AC019193.3-201ENST00000609144 554 ntBASIC1.53□□□□□ -2.16
ZNF560Q96MR9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.53□□□□□ -2.17
ZNF560Q96MR9 MIR487A-201ENST00000385009 80 ntBASIC1.52□□□□□ -2.17
ZNF560Q96MR9 AC245517.4-201ENST00000448601 281 ntBASIC1.52□□□□□ -2.17
ZNF560Q96MR9 HSPE1P24-201ENST00000450782 238 ntBASIC1.52□□□□□ -2.17
ZNF560Q96MR9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.52□□□□□ -2.17
ZNF560Q96MR9 RNU6-720P-201ENST00000516363 108 ntBASIC1.52□□□□□ -2.17
ZNF560Q96MR9 MTND1P5-201ENST00000517906 940 ntBASIC1.52□□□□□ -2.17
ZNF560Q96MR9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.52□□□□□ -2.17
ZNF560Q96MR9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.52□□□□□ -2.17
ZNF560Q96MR9 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.52□□□□□ -2.17
ZNF560Q96MR9 BNIP3P10-201ENST00000605360 577 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms