Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MIR5695-201ENST00000579717 85 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 MIR3145-201ENST00000580727 82 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 MIR3162-201ENST00000581818 82 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 AC022441.3-201ENST00000605737 136 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 RN7SL853P-201ENST00000617250 223 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 AC241585.2-209ENST00000638217 143 ntBASIC3.1□□□□□ -1.91
CHFRQ96EP1 AC093010.3-201ENST00000570269 15214 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 MIR449A-201ENST00000362113 91 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 Y_RNA.121-201ENST00000363309 113 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 RNU6-1255P-201ENST00000363434 112 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 RNA5SP126-201ENST00000365092 109 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 SNORA18.3-201ENST00000384122 132 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 MIR767-201ENST00000390228 109 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CHFRQ96EP1 FO393413.1-201ENST00000402892 195 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 Z85995.1-201ENST00000415547 335 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.09□□□□□ -1.91
CHFRQ96EP1 PTGES3P4-201ENST00000426243 356 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.09□□□□□ -1.91
CHFRQ96EP1 RNU6-1211P-201ENST00000459179 105 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 SNORA25.12-201ENST00000516202 82 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 SCARNA15.2-201ENST00000516409 127 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 RNA5SP170-201ENST00000517150 101 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 AC005176.2-201ENST00000596933 147 ntBASIC3.09□□□□□ -1.91
CHFRQ96EP1 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
CHFRQ96EP1 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CHFRQ96EP1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 MIR148B-201ENST00000362252 99 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 RNU6-1272P-201ENST00000362776 107 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 RNU4-11P-201ENST00000365287 132 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 RNU6-429P-201ENST00000384582 108 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 MIR34A-201ENST00000385130 110 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 SNORA26.7-201ENST00000391288 122 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 RPS12P18-201ENST00000442381 270 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 AC009237.8-201ENST00000445492 379 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.08□□□□□ -1.92
CHFRQ96EP1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.08□□□□□ -1.92
CHFRQ96EP1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.08□□□□□ -1.92
CHFRQ96EP1 RNA5SP367-201ENST00000516557 118 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 RNA5SP165-201ENST00000517142 115 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 AC007536.1-201ENST00000533382 349 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 MIR3658-201ENST00000636291 56 ntBASIC3.08□□□□□ -1.92
CHFRQ96EP1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.08□□□□□ -1.92
CHFRQ96EP1 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHFRQ96EP1 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
CHFRQ96EP1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU6-834P-201ENST00000362367 110 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU5B-2P-201ENST00000363036 113 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU6-275P-201ENST00000364910 107 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 SNORA29-201ENST00000384183 140 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU6-80P-201ENST00000384195 107 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU6-72P-201ENST00000384285 79 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 Y_RNA.542-201ENST00000384641 111 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU6-159P-201ENST00000391080 106 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNY4P18-201ENST00000391107 89 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.07□□□□□ -1.92
CHFRQ96EP1 AC007560.1-201ENST00000426912 237 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.07□□□□□ -1.92
CHFRQ96EP1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNA5SP385-201ENST00000515947 110 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU1-143P-201ENST00000516296 146 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU6-572P-201ENST00000516724 80 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 AC245166.1-201ENST00000521012 253 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 AC079600.2-201ENST00000550076 130 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 U1.23-201ENST00000610293 146 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 RNU1-68P-201ENST00000615382 146 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 U1.39-201ENST00000621562 146 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 AC092593.1-201ENST00000515413 1815 ntBASIC3.07□□□□□ -1.92
CHFRQ96EP1 FTLP6-201ENST00000355274 422 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC062016.1-201ENST00000355719 319 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 Y_RNA.101-201ENST00000363154 102 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 Y_RNA.319-201ENST00000365138 92 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 RNU4-17P-201ENST00000365598 141 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 RNU6-1199P-201ENST00000411249 104 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 RPL30P13-201ENST00000418873 348 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 NDUFB4P7-201ENST00000423198 363 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 BTF3P11-201ENST00000426582 477 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC105272.1-201ENST00000438604 198 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC009969.1-201ENST00000438726 172 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC005042.3-201ENST00000453230 174 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 Y_RNA.637-201ENST00000459424 114 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 RPS20P22-201ENST00000473700 357 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 SCGB1D5P-201ENST00000515134 247 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 SNORA72.7-201ENST00000516349 94 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 RNU6-58P-201ENST00000517143 103 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC068700.1-201ENST00000565862 3754 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 MIR4319-201ENST00000577285 85 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 AC024614.2-201ENST00000577584 372 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 MIR4506-201ENST00000584693 77 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.06□□□□□ -1.92
CHFRQ96EP1 ELOCP29-201ENST00000588193 334 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms